Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10j16
(633 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit... 31 0.10
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 31 0.14
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 29 0.74
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 28 0.97
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 28 0.97
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.7
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.3
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 27 3.0
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 3.0
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 26 3.9
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac... 26 3.9
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 26 5.2
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 25 6.9
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 25 6.9
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 25 9.1
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 25 9.1
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 25 9.1
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 9.1
>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 31.5 bits (68), Expect = 0.10
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 320 FY-FNEGSILSPFPNDVKASFQNIMSQSKPKNNAQYLSTGILNVAEILKSNKQMEKHDEK 496
FY +E SIL+ +++ FQ + +NN + GILNV IL + ++++
Sbjct: 388 FYEIDEQSILTLNNSEMDKYFQWYEKEFVEENNPNNIPEGILNVFPILSKDSHLQENQPT 447
Query: 497 DVHLEE 514
D+ +E
Sbjct: 448 DILTDE 453
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 31.1 bits (67), Expect = 0.14
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Frame = +2
Query: 254 ANNMPD-FPEVEYPTDMSDSSRPFYFNEGSILSPFPNDVKASFQNIMSQSKPKNNAQYLS 430
A + PD F ++ P D+S NE S L F +D+ F N + + P +
Sbjct: 287 ACDCPDYFDVIKEPMDLSTIQSKLNKNEYSTLEEFESDILLMFNNCFTYNPPGTPVHVMG 346
Query: 431 TGILNVAEILKSNKQMEKHDEKDVHLEEEHECDKI 535
+ NV + + + K D+ + ++E E D +
Sbjct: 347 RQLENVFK--EKWEARPKFDDATLVKQQEAETDAL 379
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 28.7 bits (61), Expect = 0.74
Identities = 32/155 (20%), Positives = 68/155 (43%), Gaps = 8/155 (5%)
Frame = +2
Query: 128 KPQKQSLSSQTGKNSASKNIATVTPARYKKSCKRRHGSHSTFANNMPDFPEVEYPTDMSD 307
+PQ+Q + + + S T + R HG+ N+ PD P+ + +
Sbjct: 17 QPQEQGSDNSSEPPTTSNVNNTQSTGRGSSGTSTEHGTFKKGRNDAPDVPQWKQVNAKNP 76
Query: 308 SSRPFY--------FNEGSILSPFPNDVKASFQNIMSQSKPKNNAQYLSTGILNVAEILK 463
+R + F E S SP P+ K+ +N S+ N+++ S+ + ++ +
Sbjct: 77 VARDIFARLDLENMFEESSKQSP-PS--KSPTKN-PSKKSSNNSSRRSSSSVGKLSNV-- 130
Query: 464 SNKQMEKHDEKDVHLEEEHECDKITRVEKKDEFNE 568
SN M+ KD + +++E + I+ + +++E
Sbjct: 131 SN--MQSSPSKDPFVSQDYEKESISSSQFSKKYSE 163
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 28.3 bits (60), Expect = 0.97
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Frame = -1
Query: 288 YSTSGKSGILLAKVECDPCLLLQ--------DFLYLAGVTVAMFFDAEFFP 160
Y SGKS IL+ DP L + FLY A ++ FDA FFP
Sbjct: 554 YDNSGKSPILVGTTYIDPRSLYERGFIGDIYQFLYNAVNVGSVAFDATFFP 604
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 28.3 bits (60), Expect = 0.97
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = +2
Query: 371 ASFQNIMSQSKPKN-NAQYLSTGILNVAEILKSNKQMEKHDEKDVHLEEEHECDKITRVE 547
A+ ++ S++K +N N Q S + + L+S + +EK + + L E++E + +E
Sbjct: 890 ANIEDSFSETKQQNENLQRESASLKQINNELES-ELLEKTSKVETLLSEQNELKEKLSLE 948
Query: 548 KKDEFNEFPDLLKPIEQNEKKVTFKKQE 631
+KD + + L+ + +N V +K E
Sbjct: 949 EKDLLDTKGE-LESLRENNATVLSEKAE 975
>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 27.5 bits (58), Expect = 1.7
Identities = 33/150 (22%), Positives = 59/150 (39%), Gaps = 11/150 (7%)
Frame = +2
Query: 200 PARYKKSCKRRHGSHSTFANNMPDFPEVEYPTDMSDSSRPFYFNEGS-----ILSPFPND 364
PAR+ +S ++ + ST+ +P P S Y + S P
Sbjct: 88 PARHPQSSSQKPFASSTYNVELPTSPTKITNIGQSSPRALRYLSPESQRIKNAKMKSPIS 147
Query: 365 VKASFQNIMSQSKPKNNAQYLSTGILNVAE-----ILKSNKQMEKHDEKDVHLEEEHECD 529
+ +I P + +LS+ + + A + + K +EK VH E E
Sbjct: 148 THLAKYSIHHMGTPPSKPSFLSSSVSSPASSKQKSLFQCTKDLEKRYINRVHRSSETELV 207
Query: 530 KITRVEKKDEFNEFPDL-LKPIEQNEKKVT 616
+++ ++ D F D+ L E+NE+K T
Sbjct: 208 QLSSIKVLDRF--LSDIYLVEAEKNEEKCT 235
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 143 SLSSQTGKNSASKNIATVTPARYKKSCKRRHGSHST 250
SLSS +S+ + A V+ A Y S R SHS+
Sbjct: 402 SLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSS 437
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 26.6 bits (56), Expect = 3.0
Identities = 22/91 (24%), Positives = 39/91 (42%)
Frame = +2
Query: 296 DMSDSSRPFYFNEGSILSPFPNDVKASFQNIMSQSKPKNNAQYLSTGILNVAEILKSNKQ 475
D SD + + S SPFP + + + +I K +Y S+ +N+ + N +
Sbjct: 1157 DNSDDTDYTVNDRSSPGSPFPIETE-TISSITDTLSDKQKLKYDSS--VNIENL---NDE 1210
Query: 476 MEKHDEKDVHLEEEHECDKITRVEKKDEFNE 568
+ DVH + + K+DEFN+
Sbjct: 1211 SDSQKSADVHFDSILAKSLLATTPKEDEFNK 1241
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 476 MEKHDEKDVHLEEEHECDKITRVEKKDEFNEFPDLL 583
M K+ +KD+ +E E CD + E+ + +F D++
Sbjct: 1297 MVKYIKKDLEIEIEESCDFSIQTEEIHLYKKFKDVI 1332
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/67 (20%), Positives = 29/67 (43%)
Frame = +2
Query: 182 NIATVTPARYKKSCKRRHGSHSTFANNMPDFPEVEYPTDMSDSSRPFYFNEGSILSPFPN 361
NIA + + + ++HG+ + ++ P P+ S+ P + + +PFP+
Sbjct: 96 NIAAIRAVQQMDTFAQQHGNSNYYSPPTPSLPQSATNISFDSSAIPNVQSNPNNTAPFPS 155
Query: 362 DVKASFQ 382
S Q
Sbjct: 156 YSSNSLQ 162
>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 26.2 bits (55), Expect = 3.9
Identities = 18/83 (21%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +2
Query: 386 IMSQSKPKNNAQYLST-GILNVAEILKSNKQMEKHDEKDVHLEEEHECDKITRVEKKDEF 562
+ S+ + ++A+ + G+L ++ ++ K +EK +L+EE E K +D
Sbjct: 103 VESEQQDSHDAESIPQFGLLTGKQVTFKAEERRKREEKSSNLDEE-ELRKSRETVYRDAT 161
Query: 563 NEFPDLLKPIEQNEKKVTFKKQE 631
DL+ ++ ++K+ K++E
Sbjct: 162 GRRIDLVLARKEAKRKLKEKEEE 184
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 452 EILKSNKQMEKHDEKDVHLEEEHECDKITRVEKKDEFNEFPDLLK 586
++ K KQ + + +LEE++E + + + EF+E LLK
Sbjct: 490 QLEKCKKQAKSQQKSLPYLEEQYEKYRAKAADLEKEFSESTTLLK 534
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 25.4 bits (53), Expect = 6.9
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 260 NMPDFPEV-EYPTDMSDSSRPFYFNEGSILSPFPNDVKASFQNIMS 394
++PD+ EV E+P D+S N+ + F D K F N S
Sbjct: 376 DVPDYYEVIEHPMDLSTMEFRLRNNQYESVEEFIRDAKYIFDNCRS 421
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 458 LKSNKQMEKHDEKDVHLEEEHECDKITRVEKK 553
L NKQ D+KD+H+ +H ++T+ KK
Sbjct: 111 LSPNKQ---EDKKDLHIVTQHITPQLTKESKK 139
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 128 KPQKQSLSSQTGKNSASKNIATV 196
KP+KQ S GK+ +SK+IA +
Sbjct: 671 KPRKQGGSVDKGKSKSSKDIAAL 693
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 437 ILNVAEILKSNKQMEKHDEKD 499
+LN AE+LK+ K HDEK+
Sbjct: 630 LLNKAEMLKNPKHDIHHDEKE 650
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 121 HLQAAKTISKFTDGEKFRIEEHCDSNTSKV*K 216
HLQAAK++ + G+ + C S+ ++V K
Sbjct: 775 HLQAAKSVFQSISGDLVTLAVECRSSITRVYK 806
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 633 LSCFLKVTFFSFCSMGFKRSGNSLN 559
+ CF KV F S+G + SGNSLN
Sbjct: 2130 MRCFHKVAK-EFLSLGSQPSGNSLN 2153
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,558,442
Number of Sequences: 5004
Number of extensions: 54769
Number of successful extensions: 197
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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