Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10j16
(633 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18) 37 0.012
SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38) 35 0.048
SB_37732| Best HMM Match : RVT_1 (HMM E-Value=2e-23) 33 0.19
SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_38067| Best HMM Match : DUF525 (HMM E-Value=2.5e-12) 32 0.34
SB_38133| Best HMM Match : TolA (HMM E-Value=0.38) 32 0.45
SB_40282| Best HMM Match : Cwf_Cwc_15 (HMM E-Value=5.1) 31 0.59
SB_4929| Best HMM Match : C2 (HMM E-Value=2.4e-33) 31 0.59
SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_41916| Best HMM Match : DUF164 (HMM E-Value=0.8) 29 3.1
SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_16164| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_44228| Best HMM Match : LMP (HMM E-Value=0.11) 28 5.5
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23) 28 5.5
SB_31610| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_12079| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.4e-13) 28 7.2
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 28 7.2
SB_35632| Best HMM Match : Nsp1_C (HMM E-Value=4) 28 7.2
SB_50993| Best HMM Match : EGF (HMM E-Value=3.4e-19) 27 9.6
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064) 27 9.6
SB_35963| Best HMM Match : Cadherin (HMM E-Value=0) 27 9.6
SB_34907| Best HMM Match : Cadherin (HMM E-Value=0) 27 9.6
SB_3878| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_41880| Best HMM Match : TolA (HMM E-Value=2.2) 27 9.6
>SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18)
Length = 1051
Score = 37.1 bits (82), Expect = 0.012
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +2
Query: 452 EILKSNKQMEKH--DEKDVHLEEEHECDKITRVEKKDEFNEFPDLLKPIEQNEKKV 613
EIL + E+H +E+ HL E+ EC + T+ E +D+ E P++ + I EK V
Sbjct: 236 EILTREVEEERHRYEEEIAHLTEQLECMERTKTEAEDKLAEMPNIAQRITDLEKLV 291
>SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)
Length = 1301
Score = 35.1 bits (77), Expect = 0.048
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Frame = +2
Query: 266 PDFPEV-EYPTDMSDSSRPFYFNEGSILSPFPNDVKASFQNIMSQSKPKNNAQYLSTGIL 442
P + E+ E P D+S ++ + L F +D+K F+N + + P ++ Y G
Sbjct: 386 PQYHEIIENPMDLSTIEEKLDTSKYATLDEFQSDMKLMFENCLEYNGP--DSMYTKMG-- 441
Query: 443 NVAEILKSNKQMEKHDEKDVHLEEEHECDKITRVEKKD 556
N E N+Q++KH +D +E +++ + +K+
Sbjct: 442 NTLE-AAFNRQIKKHFPEDQENSDEDFEEELRKTRRKE 478
>SB_37732| Best HMM Match : RVT_1 (HMM E-Value=2e-23)
Length = 951
Score = 33.1 bits (72), Expect = 0.19
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = +2
Query: 302 SDSSRPFYFNEGSILSPFPNDVKASFQNIMSQSKPKNNAQYLSTGILNVA 451
S + F FN+G+ L F D+KASF SQ N Q T IL++A
Sbjct: 202 SQERKVFDFNKGN-LQDFCRDMKASFMRNCSQRSVHENWQIFKTTILSLA 250
>SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 32.7 bits (71), Expect = 0.25
Identities = 22/111 (19%), Positives = 44/111 (39%)
Frame = +2
Query: 200 PARYKKSCKRRHGSHSTFANNMPDFPEVEYPTDMSDSSRPFYFNEGSILSPFPNDVKASF 379
P R + + H ++ + + P D+ + +E + F D++
Sbjct: 34 PTRVWRDVRESMLLHENLRSSPEYYDVISTPIDLLKIQQRLKTDEYEDVGTFTADMELLL 93
Query: 380 QNIMSQSKPKNNAQYLSTGILNVAEILKSNKQMEKHDEKDVHLEEEHECDK 532
N + KP + +T + V + LK + +DE D +EEE E ++
Sbjct: 94 DNALKYYKPDSQEYQDATQLKQVFDELKEEQGSGDNDESDDAMEEEMEVEE 144
>SB_38067| Best HMM Match : DUF525 (HMM E-Value=2.5e-12)
Length = 433
Score = 32.3 bits (70), Expect = 0.34
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 518 VLPLNEHLFHRAFPFVCWI*EFLRHLISQCLNIV 417
V+P+ H FH A F W+ EF L + C +++
Sbjct: 237 VIPVRMHKFHSALCFTDWLTEFADKLANNCYSVI 270
>SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)
Length = 2114
Score = 31.9 bits (69), Expect = 0.45
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Frame = +2
Query: 368 KASFQNIMSQSKPKNNAQYLSTGILNVA---EILKSNKQMEKHDEKDVHLEEEHECDKIT 538
KASF+ + K + N L ++ + K+ E+ D+K EE E +K
Sbjct: 1844 KASFKLEKAGYKVEENTDSLGMAVIEKSLQKTFHPKKKENEEEDDKKEKKEENEEEEKKK 1903
Query: 539 RVEKKDEFNEFPDLLKPIEQNEKKVTFKKQE 631
+ ++ +E ++ + + E++EKK KK+E
Sbjct: 1904 KKKENEEEDDKKNNKEENEEDEKKEKKKKEE 1934
>SB_40282| Best HMM Match : Cwf_Cwc_15 (HMM E-Value=5.1)
Length = 228
Score = 31.5 bits (68), Expect = 0.59
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = +2
Query: 218 SCKRRHGSHSTFANNMPDFPEVEYPTDMSDSSRPFYFNEGSILSPFPNDVKASFQNIMSQ 397
SC GS +F N PDF +++ ++ D SR + S + + +K+ + +S
Sbjct: 61 SCNDDEGSKPSFLKNFPDFLKLKLSSEKKDESRSISNDSEQRTSNYGSIMKSPEERSISS 120
Query: 398 SKPKNN 415
+ K++
Sbjct: 121 EESKDS 126
>SB_4929| Best HMM Match : C2 (HMM E-Value=2.4e-33)
Length = 567
Score = 31.5 bits (68), Expect = 0.59
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = +2
Query: 218 SCKRRHGSHSTFANNMPDFPEVEYPTDMSDSSRPFYFNEGSILSPFPNDVKASFQNIMSQ 397
SC GS +F N PDF +++ ++ D SR + S + + +K+ + +S
Sbjct: 53 SCNDDEGSKPSFLKNFPDFLKLKLSSEKKDESRSISNDSEQRTSNYGSIMKSPEERSISS 112
Query: 398 SKPKNN 415
+ K++
Sbjct: 113 EESKDS 118
>SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1065
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +2
Query: 383 NIMSQSKPKNNAQYLSTGILNVAEILKSNKQMEKHDEKDVHLEEEHECDKITRVEKK 553
NI+ + +PK Q ++ + E + + +Q K + + +H EE H+C +I EK+
Sbjct: 767 NILHKDEPKQAEQMMAGVMARFKETISTLEQQAKLERQRLH-EEHHQCLQIHINEKR 822
>SB_41916| Best HMM Match : DUF164 (HMM E-Value=0.8)
Length = 391
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Frame = +2
Query: 359 NDVKASFQNIMSQ-SKPKNNAQYLSTGILNVAEILKSNKQM--EKHDEKDVHLEEEHECD 529
++ + QN+ + K + + +A ++S K+ E H+EKD+ L E + +
Sbjct: 187 DEKQQKMQNLQRELDDQKGKRERAGKQVSKIARDVRSAKKSRGELHEEKDIELRELRDFN 246
Query: 530 KITRVEKKDEFNEFPDL 580
T + + + +PDL
Sbjct: 247 SKTMKQMGEVIHSYPDL 263
>SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 473 QMEKHDEKDVHLEEEHECDKITRVEKKDEFNEFPDLLKPIEQNEKKV 613
+ME EK+V E+E E +K EK+ E + + K +E EK+V
Sbjct: 24 EMEVETEKEVETEKEVETEKEVETEKEVETEKEVETKKEVE-TEKEV 69
>SB_16164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 28.3 bits (60), Expect = 5.5
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Frame = +2
Query: 329 NEGSILSPFPNDVKASFQNIMSQSKPKNNAQYLSTGILNVAEILKSNKQMEKHD--EKDV 502
N+ S P PN + + ++KP N Q I+ + + K+ ++HD K
Sbjct: 51 NDDSDSPPDPNPISGGTMDDTPKAKPSKNKQNAIDNIVKLPTV-KAKHHPDEHDMSAKSH 109
Query: 503 HLEEEHECDKITRV--EKKDE 559
E++ ++I RV E KDE
Sbjct: 110 DAPVENKENEIARVSPETKDE 130
>SB_44228| Best HMM Match : LMP (HMM E-Value=0.11)
Length = 276
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/84 (17%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +2
Query: 362 DVKASFQNIMSQSKPKNNAQY-LSTGILNVAEILKSNKQMEKHDEKDVHLEEEHECDKIT 538
+ +A+ ++++S+ + N + L + + + ++S +Q + + + E EH+C K++
Sbjct: 162 EARATNESLVSELRNANEDKVTLKEQLKQMEQAIESQRQRHSDEIQRISAEHEHQCAKLS 221
Query: 539 RVEKKDEFNEFPDLLKPIEQNEKK 610
+ + + +E + ++ +E+ KK
Sbjct: 222 Q-KIESLSSEQEEAIQDLEKQLKK 244
>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
Length = 1531
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 479 EKHDEKDVHLEEEHECDKITRV-EKKDEFNEFPDLLKPIEQ 598
E DE D LEE HE DK+ +V KKD N + +P+E+
Sbjct: 752 EDEDEIDAGLEE-HE-DKLVKVYTKKDNLNRDKVVSEPVEE 790
>SB_31610| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 109
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/55 (23%), Positives = 32/55 (58%)
Frame = +2
Query: 461 KSNKQMEKHDEKDVHLEEEHECDKITRVEKKDEFNEFPDLLKPIEQNEKKVTFKK 625
+ ++ E+ +E++ EEE E ++ E+++E E + + E+ E++ TF++
Sbjct: 30 EEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEEEEEEEATFRR 84
>SB_12079| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.4e-13)
Length = 420
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +2
Query: 452 EILKSNKQMEKHDEKDVHLEEEHECDKITRVEKKDEFNEFPDLLK 586
++ + +Q+E+ E +E+E E K+T E++ E +LL+
Sbjct: 115 DLALARRQVEEEQENKNRVEQELEAFKVTSAEQQQELQRQNELLE 159
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +2
Query: 422 YLSTGILNVAEILKSNKQMEKHDEKDVHLEEEHECDKITRVEKKDEFNEF 571
++ G L++ ILK + Q+E+ +EK+ EE HE +K V + E EF
Sbjct: 3352 HVCKGTLSI--ILKEDHQVEQGEEKET--EERHEFEKEEEVNHR-EIEEF 3396
>SB_35632| Best HMM Match : Nsp1_C (HMM E-Value=4)
Length = 429
Score = 27.9 bits (59), Expect = 7.2
Identities = 21/98 (21%), Positives = 44/98 (44%)
Frame = +2
Query: 293 TDMSDSSRPFYFNEGSILSPFPNDVKASFQNIMSQSKPKNNAQYLSTGILNVAEILKSNK 472
T+ + + P Y N+ ++ ND++ S + + S KN + + N+A + N
Sbjct: 143 TEDDEPAMP-YINQAMDIAEKNNDIRCSVVDFLLYSTQKNKTKEVLVAAYNMAHGI--NN 199
Query: 473 QMEKHDEKDVHLEEEHECDKITRVEKKDEFNEFPDLLK 586
++ K D+ + + + + EK+ F E + LK
Sbjct: 200 ELTKCDKVGRACAQIYLSSEFQKDEKERYFQEGEESLK 237
>SB_50993| Best HMM Match : EGF (HMM E-Value=3.4e-19)
Length = 220
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +2
Query: 152 SQTGKNSASKNIATVTPARYKKSCKRRHGSHSTFANNMPDFPE 280
S TGK++ NI T+ K+ C + N+PD+ +
Sbjct: 97 SDTGKSTLIVNITTLLAVNAKEPCAEAPCQNEGLCANLPDYSD 139
>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
Length = 1230
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +2
Query: 476 MEKHDEKDVHLEEEHECDKITRVEKKDEFNEFPDLLKPIEQNEKKVTFKKQE 631
MEK D EE + +T V KDE ++F DL+ + + KK F+K E
Sbjct: 337 MEKEMGLDPSTAEE-KTKNLTSV-LKDEMSKFKDLINKQDDSVKKEKFEKLE 386
>SB_35963| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 864
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 248 TFANNMPDFPEVEYPTDMSDSSRPFYFNEGS 340
T +++ +P V P+ SD +RP F EGS
Sbjct: 339 TIRSDISGYPPVVVPSSSSDRNRPPVFPEGS 369
>SB_34907| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 697
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 248 TFANNMPDFPEVEYPTDMSDSSRPFYFNEGS 340
T +++ +P V P+ SD +RP F EGS
Sbjct: 335 TIRSDISGYPPVVVPSSSSDRNRPPVFPEGS 365
>SB_3878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 243
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/41 (24%), Positives = 27/41 (65%)
Frame = +2
Query: 509 EEEHECDKITRVEKKDEFNEFPDLLKPIEQNEKKVTFKKQE 631
E+E + D++ +EK+++ NE ++ + + NEK+ ++++
Sbjct: 137 EKEDDNDEVEEIEKREDANEKEEIEEREDANEKEEIEERED 177
>SB_41880| Best HMM Match : TolA (HMM E-Value=2.2)
Length = 374
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 470 KQMEKHDEKDVHLEEEHECDKITRVEKKDEFNEFPDLLKPIEQNEKKVTFKK 625
K ++K++EKDV EEE + K K + P+ K EQ +K + +K
Sbjct: 293 KNVKKNEEKDVQKEEEKDVQKKVEKSAKHLPQKKPE-SKKHEQTKKDLKGRK 343
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,047,665
Number of Sequences: 59808
Number of extensions: 371322
Number of successful extensions: 1250
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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