Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j15
         (448 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase ...    27   0.40 
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    25   0.92 
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    24   2.8  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   3.7  

>AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase
           protein.
          Length = 808

 Score = 26.6 bits (56), Expect = 0.40
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 140 EVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFIVKAT 301
           EV  R    R+ + DL  Q +K+EN++  L      + +   +LTE K +++ T
Sbjct: 84  EVIPRTPNSREII-DLEAQLEKTENEIVELSENNNALLQNFMELTELKHVLEKT 136


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 25.4 bits (53), Expect = 0.92
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +2

Query: 107 QDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQ-SVGQIVGEVLKQLTE 277
           Q  +K L E K      +  RDQ   +  ++D++ + LKA +    ++V E +KQ  E
Sbjct: 309 QQIQKYLCEQKRKIGEFEVERDQAAGILAKHDETYDALKAERVEKEKLVKEEIKQYDE 366


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = +2

Query: 137 KEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLT---EEKFIVKATNG 307
           KE++ R  E R+Q +DL +Q  K +     ++   Q   E+  +L    EEK  VK    
Sbjct: 643 KELQERCAELREQKRDLQEQLSKYQQTKMKVKRQEQKCKELTARLVNVDEEK--VKFERS 700

Query: 308 PRYVVGCRRQLDKNKLK 358
            R ++   + LD+ + K
Sbjct: 701 CRTII--EQLLDQQRRK 715


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 113 YRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLK 223
           +  K    K ++  LK    Q+KD     +K ++DLK
Sbjct: 385 FSSKEERDKWIQGELKSLNKQIKDKISHQNKLQDDLK 421


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 420,903
Number of Sequences: 2352
Number of extensions: 7508
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 37843779
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)