Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j13
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   4.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   5.9  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    22   5.9  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    22   5.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 342 SPVYSV-IMKLKKEVDINHGDSVVWKNIEM 428
           S +YSV ++ L K +++NH  + V  N+E+
Sbjct: 301 SKLYSVSVVSLDKSLEVNHISARVGDNVEI 330


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 122 PSGLCRTADPSAETKTTQANLEQEE 196
           P G+C T D   +T +T+  L++ +
Sbjct: 367 PPGVCYTCDVCGKTLSTKLTLKRHK 391


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 91  NNTVRMTSFNTLWTMSNSRSISRN 162
           NN       N LWT ++++ IS N
Sbjct: 289 NNVHYQGKENILWTQASAKGISDN 312


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 348 VYSVIMKLKKEVDINHGDSVVWK 416
           V SV+   KKEV    G  V W+
Sbjct: 108 VESVVETCKKEVTSTEGCEVAWQ 130


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 348 VYSVIMKLKKEVDINHGDSVVWK 416
           V SV+   KKEV    G  V W+
Sbjct: 82  VESVVETCKKEVTSTEGCEVAWQ 104


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/57 (19%), Positives = 21/57 (36%)
 Frame = -1

Query: 533 IFLCIVSEMIPRL*GVTEXXXXXXXXXNRRVRAGGHFYILPNDGIAVIDINFFLEFH 363
           +  C+V   +  L  V              ++  G F++LP   + V  + F  + H
Sbjct: 149 VLRCVVPSFVKDLVRVVSWLQEPSFYIYPSLQGDGKFHLLPTGELLVHSLEFSDQIH 205


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/57 (19%), Positives = 21/57 (36%)
 Frame = -1

Query: 533 IFLCIVSEMIPRL*GVTEXXXXXXXXXNRRVRAGGHFYILPNDGIAVIDINFFLEFH 363
           +  C+V   +  L  V              ++  G F++LP   + V  + F  + H
Sbjct: 149 VLRCVVPSFVKDLVRVVSWLQEPSFYIYPSLQGDGKFHLLPTGELLVHSLEFSDQIH 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,894
Number of Sequences: 438
Number of extensions: 2710
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)