Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10j12
(609 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 26 5.0
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 25 6.5
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p... 25 6.5
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 8.7
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 8.7
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 8.7
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 8.7
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 8.7
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 8.7
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 8.7
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 8.7
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 8.7
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 8.7
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 8.7
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 257 NYYNHFLFTDNSANSIHPLFVNYNL 331
N+ N F F DN+ NS PLF + N+
Sbjct: 97 NWLNPFAF-DNTMNSAPPLFTSTNM 120
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 31 PLKDIFVDIIPHPVSCRAYFWELYVCLTR 117
PLKD D++ H + AY ++ LTR
Sbjct: 1101 PLKDSMKDLVQHAFTITAYDSNIHNALTR 1129
>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 509
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 314 FVNYNLALLVKINNHNDLINL 376
FV+YN+ V NH+DL +L
Sbjct: 285 FVDYNVPFAVNFGNHDDLGDL 305
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 248 NSINYYNHFLFTDNSANSIHPLFVNYNLALLVKINNHN 361
NSIN+ N TD+ N + + N + LL +NN +
Sbjct: 846 NSINFVNQISITDDFKNQVVTEYTN-DTKLLNLLNNED 882
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 248 NSINYYNHFLFTDNSANSIHPLFVNYNLALLVKINNHN 361
NSIN+ N TD+ N + + N + LL +NN +
Sbjct: 846 NSINFVNQISITDDFKNQVVTEYTN-DTKLLNLLNNED 882
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 248 NSINYYNHFLFTDNSANSIHPLFVNYNLALLVKINNHN 361
NSIN+ N TD+ N + + N + LL +NN +
Sbjct: 846 NSINFVNQISITDDFKNQVVTEYTN-DTKLLNLLNNED 882
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 248 NSINYYNHFLFTDNSANSIHPLFVNYNLALLVKINNHN 361
NSIN+ N TD+ N + + N + LL +NN +
Sbjct: 846 NSINFVNQISITDDFKNQVVTEYTN-DTKLLNLLNNED 882
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 248 NSINYYNHFLFTDNSANSIHPLFVNYNLALLVKINNHN 361
NSIN+ N TD+ N + + N + LL +NN +
Sbjct: 846 NSINFVNQISITDDFKNQVVTEYTN-DTKLLNLLNNED 882
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 248 NSINYYNHFLFTDNSANSIHPLFVNYNLALLVKINNHN 361
NSIN+ N TD+ N + + N + LL +NN +
Sbjct: 846 NSINFVNQISITDDFKNQVVTEYTN-DTKLLNLLNNED 882
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 248 NSINYYNHFLFTDNSANSIHPLFVNYNLALLVKINNHN 361
NSIN+ N TD+ N + + N + LL +NN +
Sbjct: 846 NSINFVNQISITDDFKNQVVTEYTN-DTKLLNLLNNED 882
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 248 NSINYYNHFLFTDNSANSIHPLFVNYNLALLVKINNHN 361
NSIN+ N TD+ N + + N + LL +NN +
Sbjct: 846 NSINFVNQISITDDFKNQVVTEYTN-DTKLLNLLNNED 882
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 248 NSINYYNHFLFTDNSANSIHPLFVNYNLALLVKINNHN 361
NSIN+ N TD+ N + + N + LL +NN +
Sbjct: 846 NSINFVNQISITDDFKNQVVTEYTN-DTKLLNLLNNED 882
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 248 NSINYYNHFLFTDNSANSIHPLFVNYNLALLVKINNHN 361
NSIN+ N TD+ N + + N + LL +NN +
Sbjct: 846 NSINFVNQISITDDFKNQVVTEYTN-DTKLLNLLNNED 882
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 248 NSINYYNHFLFTDNSANSIHPLFVNYNLALLVKINNHN 361
NSIN+ N TD+ N + + N + LL +NN +
Sbjct: 846 NSINFVNQISITDDFKNQVVTEYTN-DTKLLNLLNNED 882
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,219,175
Number of Sequences: 5004
Number of extensions: 41820
Number of successful extensions: 107
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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