Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j12
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0057 - 12953479-12954364,12954484-12955034,12955125-129553...    29   3.8  
03_06_0364 + 33392181-33392487,33392919-33392994,33393671-333937...    29   3.8  

>11_04_0057 -
           12953479-12954364,12954484-12955034,12955125-12955342,
           12957514-12957678,12960562-12960898
          Length = 718

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = -3

Query: 187 RPKKFAAPGTCLDCPYSLVNKFKNALNRHKAPKNMH-DSSPDAE*CPQKCLLRAHQHTKN 11
           R  KF  P T    P  ++  F+  + ++ APK+    S+P+      K  +R      N
Sbjct: 14  RSLKFTLPNTVFFVPAGVITIFEFTMAKNMAPKSSALGSNPEVRHAQSKIAIRTSADELN 73

Query: 10  C 8
           C
Sbjct: 74  C 74


>03_06_0364 +
           33392181-33392487,33392919-33392994,33393671-33393740,
           33394291-33394320,33394724-33394867,33394954-33395058,
           33395496-33395642,33396994-33397069,33397726-33397814,
           33398178-33398269,33398351-33398390,33398475-33398531
          Length = 410

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 217 LKKYLISKFCRPKKFAAPGTCLDCPYSLVNKFKNALNRHK 98
           LK + I +FC   +  A GTC  C Y+ VN F+  +   +
Sbjct: 280 LKDHAIFRFCAIPQIMAIGTCAIC-YNNVNVFRGVVKMRR 318


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,645,414
Number of Sequences: 37544
Number of extensions: 211546
Number of successful extensions: 292
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)