Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j12
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10408| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_17130| Best HMM Match : RVT_1 (HMM E-Value=0.0013)                  28   5.1  
SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026)                    28   6.8  
SB_56019| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_10408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 24/71 (33%), Positives = 36/71 (50%)
 Frame = +2

Query: 296 NSIHPLFVNYNLALLVKINNHNDLINLFPWTFKIIIDFSIFWN*RNLISSFFYVI*YHYV 475
           N  +PL  + +   ++KI +H+ L      + K +I   I+ N +N  SS F  I YH+ 
Sbjct: 203 NHQNPLSSSSSFIKIIKIRHHHHLSK----SSKSVIVI-IYQNHQNPSSSSFIKIRYHHR 257

Query: 476 SSPLSVKFIIV 508
            S  S  FIIV
Sbjct: 258 LSKSSKSFIIV 268


>SB_17130| Best HMM Match : RVT_1 (HMM E-Value=0.0013)
          Length = 994

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 109 NRHKAPKNMHDSSPDAE*CPQKCLLRA 29
           NRH+     +D  PDA   PQ  LLRA
Sbjct: 202 NRHRTLSGTYDFDPDATESPQDFLLRA 228


>SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026)
          Length = 528

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 490 CKIYHCSKKKQIVIYVFGIYNIC*SFYNKISYFNFEKKYI 609
           C  Y C   + + I  FG + I  SFYN+++   ++++YI
Sbjct: 308 CLGYLCPSWRDLFIKKFGKFIIDQSFYNRLTPTQWKEQYI 347


>SB_56019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 493

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 166 GRQIF*GGKILKLSIFLVLSRLLNIID 246
           GR++  G KI K+ +FL+ SRLL  ++
Sbjct: 434 GRRVCPGEKIAKMQLFLMTSRLLRHLE 460


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,397,826
Number of Sequences: 59808
Number of extensions: 270516
Number of successful extensions: 433
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)