Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j12
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75532-5|CAD56651.1|  360|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z75532-4|CAA99811.1|  310|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z75549-8|CAD60424.1|  297|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>Z75532-5|CAD56651.1|  360|Caenorhabditis elegans Hypothetical
           protein C54G10.4b protein.
          Length = 360

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +2

Query: 248 NSINYYNHFLFTDNSANSIHPLFVNYNLALLVKINNHNDLINLFPWTFKIIIDFSIFWN 424
           NS   Y H +            FV  N AL+    ++        WT++I++DF++  N
Sbjct: 225 NSYKSYMHCIKQTYLERGYRGFFVGLNSALIRAFPSNAATFFTVEWTYRILLDFNVIDN 283


>Z75532-4|CAA99811.1|  310|Caenorhabditis elegans Hypothetical
           protein C54G10.4a protein.
          Length = 310

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +2

Query: 248 NSINYYNHFLFTDNSANSIHPLFVNYNLALLVKINNHNDLINLFPWTFKIIIDFSIFWN 424
           NS   Y H +            FV  N AL+    ++        WT++I++DF++  N
Sbjct: 225 NSYKSYMHCIKQTYLERGYRGFFVGLNSALIRAFPSNAATFFTVEWTYRILLDFNVIDN 283


>Z75549-8|CAD60424.1|  297|Caenorhabditis elegans Hypothetical
           protein T19C4.9 protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
 Frame = +2

Query: 290 SANSIHPLFVNYNLALLVKINNHNDLIN---------LFPWTFKIIIDFSIF 418
           SA S H  +V Y+L  +V +N    LIN          F W F ++I F  F
Sbjct: 91  SAMSFHMAYVQYSLTTMVSLNRLTVLINHKVFEPIWKKFTWLFVVLIYFLPF 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,163,550
Number of Sequences: 27780
Number of extensions: 229776
Number of successful extensions: 405
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)