Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10j12
(609 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.19
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.19
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.19
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.19
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.19
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.19
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 27 0.19
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 27 0.19
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 25 0.58
DQ384991-1|ABD51779.1| 94|Apis mellifera allergen Api m 6 vari... 24 1.0
DQ384990-1|ABD51778.1| 92|Apis mellifera allergen Api m 6 vari... 24 1.0
AB208108-1|BAE72140.1| 92|Apis mellifera Broad complex zinc fi... 23 1.8
L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein pro... 23 2.3
D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein. 23 2.3
AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase pro... 23 2.3
EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein. 22 5.4
DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex det... 22 5.4
EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein. 21 7.1
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 21 9.4
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 21 9.4
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 21 9.4
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.19
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 293 ANSIHPLFVNYNLAL--LVKINNHNDLINLFPWTFKIIIDFSIFWN 424
AN PL V + + L ++ ++ N ++ W +D+++ WN
Sbjct: 6 ANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.19
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 293 ANSIHPLFVNYNLAL--LVKINNHNDLINLFPWTFKIIIDFSIFWN 424
AN PL V + + L ++ ++ N ++ W +D+++ WN
Sbjct: 6 ANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.19
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 293 ANSIHPLFVNYNLAL--LVKINNHNDLINLFPWTFKIIIDFSIFWN 424
AN PL V + + L ++ ++ N ++ W +D+++ WN
Sbjct: 6 ANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.19
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 293 ANSIHPLFVNYNLAL--LVKINNHNDLINLFPWTFKIIIDFSIFWN 424
AN PL V + + L ++ ++ N ++ W +D+++ WN
Sbjct: 6 ANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.19
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 293 ANSIHPLFVNYNLAL--LVKINNHNDLINLFPWTFKIIIDFSIFWN 424
AN PL V + + L ++ ++ N ++ W +D+++ WN
Sbjct: 6 ANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.19
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 293 ANSIHPLFVNYNLAL--LVKINNHNDLINLFPWTFKIIIDFSIFWN 424
AN PL V + + L ++ ++ N ++ W +D+++ WN
Sbjct: 6 ANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWN 51
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 26.6 bits (56), Expect = 0.19
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 293 ANSIHPLFVNYNLAL--LVKINNHNDLINLFPWTFKIIIDFSIFWN 424
AN PL V + + L ++ ++ N ++ W +D+++ WN
Sbjct: 74 ANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWN 119
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 26.6 bits (56), Expect = 0.19
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 293 ANSIHPLFVNYNLAL--LVKINNHNDLINLFPWTFKIIIDFSIFWN 424
AN PL V + + L ++ ++ N ++ W +D+++ WN
Sbjct: 74 ANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWN 119
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 25.0 bits (52), Expect = 0.58
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 296 NSIHPLFVNYNLALLVKINNHNDLINL 376
+S+ LF+N N LV+ N D +NL
Sbjct: 617 DSVELLFINNNYINLVRPNTFTDKVNL 643
>DQ384991-1|ABD51779.1| 94|Apis mellifera allergen Api m 6 variant
2 precursor protein.
Length = 94
Score = 24.2 bits (50), Expect = 1.0
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +1
Query: 145 GNRGKCPGRQIF 180
G RGKCP +IF
Sbjct: 32 GGRGKCPSNEIF 43
>DQ384990-1|ABD51778.1| 92|Apis mellifera allergen Api m 6 variant
1 precursor protein.
Length = 92
Score = 24.2 bits (50), Expect = 1.0
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +1
Query: 145 GNRGKCPGRQIF 180
G RGKCP +IF
Sbjct: 32 GGRGKCPSNEIF 43
>AB208108-1|BAE72140.1| 92|Apis mellifera Broad complex zinc
finger domain-Z3 isoform protein.
Length = 92
Score = 23.4 bits (48), Expect = 1.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 15 FVC*WALKRHFCGHHSASGEL 77
F C ++LKRHF H S L
Sbjct: 15 FSCYYSLKRHFQDKHEQSDTL 35
>L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein
protein.
Length = 69
Score = 23.0 bits (47), Expect = 2.3
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 166 PGTCLDCPYSLVNKFKNALNRH-KAPKNMH 80
P C C YS VN K+ LN H K+ N++
Sbjct: 16 PFKCEKCSYSCVN--KSMLNSHLKSHSNVY 43
>D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein.
Length = 567
Score = 23.0 bits (47), Expect = 2.3
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -3
Query: 142 YSLVNKFKNALNRHKAPKNM 83
Y++V KF++ L+ PK+M
Sbjct: 264 YNVVRKFRDVLDEFPQPKHM 283
>AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase
protein.
Length = 567
Score = 23.0 bits (47), Expect = 2.3
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -3
Query: 142 YSLVNKFKNALNRHKAPKNM 83
Y++V KF++ L+ PK+M
Sbjct: 264 YNVVRKFRDVLDEFPQPKHM 283
>EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein.
Length = 684
Score = 21.8 bits (44), Expect = 5.4
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = -1
Query: 561 LTYVIYSKNINNYLFFFRTMINFTL 487
L Y I +N Y FF R F L
Sbjct: 220 LNYFIEDIGLNTYYFFLRQAFPFWL 244
>DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 21.8 bits (44), Expect = 5.4
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -2
Query: 332 PSYNSQIMDELNLLNYQ*TENDYNN 258
P S + + N NY N+YNN
Sbjct: 79 PKIISSLSNNYNYSNYNNYNNNYNN 103
>EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein.
Length = 684
Score = 21.4 bits (43), Expect = 7.1
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = -1
Query: 561 LTYVIYSKNINNYLFFFRTMINFTL 487
L Y I +N Y FF R F L
Sbjct: 220 LIYFIEDIGLNTYYFFLRQAFPFWL 244
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.0 bits (42), Expect = 9.4
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = -2
Query: 338 KVPSYNSQIMDELNLLNYQ*TENDYNN**N*SIILSNLDKTKK--ILNFKILPP*KICRP 165
K P S + + NY N+YNN N + +N K K I+N + +P
Sbjct: 77 KEPKIISSLSNNYKYSNYNNYNNNYNNNYN-NNYNNNYKKLYKNYIINIEQIPVPVPVYY 135
Query: 164 GHLPRLPL 141
G+ P P+
Sbjct: 136 GNFPPRPM 143
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.0 bits (42), Expect = 9.4
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = -2
Query: 338 KVPSYNSQIMDELNLLNYQ*TENDYNN**N*SIILSNLDKTKK--ILNFKILPP*KICRP 165
K P S + + NY N+YNN N + +N K K I+N + +P
Sbjct: 77 KEPKIISSLSNNYKYSNYNNYNNNYNNNYN-NNYNNNYKKLYKNYIINIEQIPVPVPVYY 135
Query: 164 GHLPRLPL 141
G+ P P+
Sbjct: 136 GNFPPRPM 143
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.0 bits (42), Expect = 9.4
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 242 LINSINYYNHFLFTDNSANSIHPLFVNYNLALLVKI 349
L N+ NY N++ +N+ N+ + YN+ + +I
Sbjct: 88 LSNNYNYNNNYNNYNNNYNTNYKKLQYYNIINIEQI 123
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,524
Number of Sequences: 438
Number of extensions: 3332
Number of successful extensions: 23
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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