Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j11
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    30   0.015
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.0  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   5.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 30.3 bits (65), Expect = 0.015
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +1

Query: 61  NMEETHINNFALSFTNNVLSYCGQDCKKIPPA--LQKMYGAKVKCLDLSYNSIETLKGLE 234
           N+ E HI  F  +F    L +       I       K+  +KVK LD S+N I  L  L 
Sbjct: 555 NLSENHIEWFDYAFIPGNLKWLDIHGNFIESLGNYYKIRDSKVKTLDASHNRITELSPLS 614

Query: 235 QFARLEELILDNNQLS 282
               +E L ++NN ++
Sbjct: 615 VPDSVELLFINNNYIN 630



 Score = 27.5 bits (58), Expect = 0.10
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
 Frame = +1

Query: 181 VKCLDLSYNSIETLK--GLEQFARLEELILDNNQLSD--GIKFPKLPYLKTLSLNNNQI 345
           ++ L+L+ N ++ ++    E+  RLE + LD N LSD  G+ F  +  L  L+L+ N I
Sbjct: 504 LQILNLARNKVQHVERYAFERNMRLEAIRLDGNFLSDINGV-FTSIASLLLLNLSENHI 561


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 85  NFALSFTNNVLSYCGQDCKKIPPAL 159
           N+ + + +NVL Y   D   +PPA+
Sbjct: 122 NYEVRYKSNVLIYPNGDVLWVPPAI 146


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +1

Query: 223 KGLEQFARLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANLEDLVDKIRENFPVLSY 402
           +GLE    L E+I D + + D  KF  +  +KT+       + + +  +   E+ P   +
Sbjct: 809 QGLECLRFLNEVISDFDAILDQNKFKDIIKIKTIGSTYMAASGITESAES--EDGPRWGH 866

Query: 403 LSLL 414
           LS L
Sbjct: 867 LSTL 870


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 262 KSTPPASRTVRDPLMFRYCCNLDLNI 185
           K+    S TV+     +YC N+ LNI
Sbjct: 93  KNCNAGSLTVKKNFANKYCGNITLNI 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,406
Number of Sequences: 438
Number of extensions: 3758
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)