Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10j10
(617 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 29 0.54
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 27 1.6
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac... 26 5.0
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc... 26 5.0
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 5.0
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces... 25 6.6
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 8.8
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 25 8.8
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 8.8
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 29.1 bits (62), Expect = 0.54
Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 4/132 (3%)
Frame = -1
Query: 410 LGKESSKSIVILAMLRMALIIS*LFNFSVNGVQPFLAHTLHIISFDNCRDFFPSNCCHRX 231
L +S++ + +++ IIS L S + PFL H L + ++ PS+ H+
Sbjct: 597 LTNSTSQNKSMHLQVQLLHIISSLCQSSSALILPFLNHNLPDVMYEMLCGIPPSDTSHQA 656
Query: 230 XXXXXXXXSPNE*G*YDSLLNFDNIDFVM*NAIIDNPAALTQKFNTRIY----TKLYIEI 63
Y + +N+ + + + N + L+ +FNT++Y L + +
Sbjct: 657 DMITMQSLY------YCPIELIENLLRAITSLLPKNTSNLSDEFNTKLYRLNSILLTVVM 710
Query: 62 HIYFLFQMHKIK 27
IYF+ +H I+
Sbjct: 711 DIYFIVPLHDIR 722
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 27.5 bits (58), Expect = 1.6
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 415 ICTECLDMLKVALNFKTNCETADKK--FRKLLNPMGNPAFYSYPYSKNDFQLILHKMKTK 588
+ T+CLD L L + E ADK+ +R+LL N +S+ DF L + KTK
Sbjct: 478 VATQCLDNLLSVLPNEDLMEIADKRPSYRQLLY---NCCVEISQFSREDFSNSLSENKTK 534
>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 446
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +1
Query: 151 KSMLSKFNKESYQPYSFGEEERXXXXXDLWQQFDGKKSLQLSKEMICRVCARNG 312
K+ +F++ Y PYS+ EE D + G + + S+E + + +G
Sbjct: 94 KTRPKQFDECIYSPYSYNNEETTDLLPDTLESSRGTLNRESSQESLQSIFEESG 147
>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 310 RFLHIPCISFLLIIVEIFS 254
RFL PCIS LL + +FS
Sbjct: 262 RFLFDPCISILLTFIILFS 280
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Frame = +1
Query: 409 KYICTECLDMLKVALNFKTNCETA------DKKFRKLLNPMGNPAFY 531
K+ CL+ +K+ + TN E D++ ++ L+P NP +Y
Sbjct: 3941 KFEARSCLNQIKILPSRFTNIEDTLRFLRHDEEAKRFLDPFKNPPYY 3987
>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 366
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 115 AAGLSIMAFYITKSMLSKFNKESYQP 192
+ G+S MA T + LSK+ ++Y+P
Sbjct: 67 SGGISSMAMLETANYLSKYRDDNYRP 92
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 255 EKISTIIKRNDMQGMCKKRLYSIN 326
E+ TI+K ++Q KR+YS++
Sbjct: 1028 ERFDTIVKEAELQATDPKRIYSLS 1051
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 25.0 bits (52), Expect = 8.8
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = +1
Query: 91 LVLNFCVNAAGLSIMAFYITKSMLSKFNKESYQPYSFGEEERXXXXXDLWQQFDGKKSLQ 270
L+L+ A L + A+ + S+F + + E+ER LW+Q + S Q
Sbjct: 477 LILSEFSGTAELLLSAYLVNPYDYSRFAETINYCLNMTEKERERRFSSLWKQATSQSSQQ 536
Query: 271 LSKEMICR 294
++I R
Sbjct: 537 WIYKLINR 544
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 472 ETADKKFRKLLNPMGNPAFYSYPYSKNDFQLILHKMKTK 588
E DK + L+ + +P SYP+SK + HK K
Sbjct: 481 EMKDKNHKVLMPSLDDPML-SYPWSKEVLGCLKHKFHLK 518
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,573
Number of Sequences: 5004
Number of extensions: 50343
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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