Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j10
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0281 + 2059397-2059721,2059807-2060675,2086761-2086910           31   0.97 
03_02_0995 - 13071930-13072007,13072708-13072999,13073096-130732...    30   1.7  

>12_01_0281 + 2059397-2059721,2059807-2060675,2086761-2086910
          Length = 447

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +1

Query: 283 MICRVCARNGCTPLTEKLNSYDIISAIRSIANITIDLD---DSLPKYICTECLDMLKVA 450
           ++CR+C+R  C  L E+L    I    +S   + ID D   D LPK +     ++L +A
Sbjct: 56  LLCRICSRLSCRDLVEELCMLHIFPLSQS-WQVGIDQDEEVDGLPKLVMPAGANVLTLA 113


>03_02_0995 -
           13071930-13072007,13072708-13072999,13073096-13073226,
           13073564-13074466,13074545-13074631,13075141-13075224,
           13075355-13075408,13075903-13076034,13076164-13076259,
           13076508-13076777,13078711-13078800,13079942-13080008,
           13080150-13080241,13080359-13080487
          Length = 834

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 376 NITIDLDDSLPKYICTECLDMLKVALNFKTNCETADKKFRKLLNPMGN 519
           N+T+D+  +L  ++     D+LKVALN   N    D   R + + + N
Sbjct: 765 NVTVDVFRNLSPHVQACVPDLLKVALNCMDNVRDTDGTLRAVKSKIAN 812


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,999,369
Number of Sequences: 37544
Number of extensions: 257680
Number of successful extensions: 554
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)