Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j10
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        24   1.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.3  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   9.6  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   9.6  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   9.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.6  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 487 KFRKLLNPMGNPAFYSYPYSKN 552
           K  K + P  N  +Y+YPY  N
Sbjct: 202 KAAKRMRPAANWGYYAYPYCYN 223


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 328 EKLNSYDIISAIRSIANITIDLDD 399
           +KLN+ DI+  +R  A+I  D D+
Sbjct: 154 DKLNTQDIVPGVRIGAHILDDCDN 177


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +1

Query: 373 ANITIDLDDSLPKYICTECLDMLKVALNFKTNCETADK 486
           A++T D ++++P+Y+  + +  LK       + + ADK
Sbjct: 430 ASVT-DSENTVPRYLSPDVISALKGVRFIAQHIKNADK 466


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +1

Query: 106 CVNAAGLSIMAFYI 147
           CV+ + LS++AFY+
Sbjct: 246 CVSISYLSVLAFYL 259


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 204 RRREKQQQ**SMAAV*REKISTIIKRNDMQGMCKKRLYSIN 326
           R RE+ ++   ++++    IS I   N+     KK  Y+IN
Sbjct: 71  RERERSKERKIISSLSNNYISNISNYNNNNNYNKKLYYNIN 111


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 32  SYAFEIKNKYVFQCIIWYKFLC*IFVLMLQD 124
           S+     NK +FQ + W K +     L L+D
Sbjct: 232 SHICNATNKQLFQLVAWAKHIPHFTSLPLED 262


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 32  SYAFEIKNKYVFQCIIWYKFLC*IFVLMLQD 124
           S+     NK +FQ + W K +     L L+D
Sbjct: 232 SHICNATNKQLFQLVAWAKHIPHFTSLPLED 262


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 158 IDFVM*NAIIDNPAALTQKFNTRIYT 81
           I+F   N I+D    + ++ N +IYT
Sbjct: 507 INFSKNNTIVDISKLVNKRNNAKIYT 532


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,581
Number of Sequences: 438
Number of extensions: 3567
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)