Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j10
         (617 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13030.1 68414.m01511 sphere organelles protein-related conta...    29   3.3  
At5g28730.1 68418.m03529 hypothetical protein                          28   4.3  
At1g35650.1 68414.m04431 Ulp1 protease family protein PF02902: U...    28   5.7  
At1g35770.1 68414.m04447 Ulp1 protease family protein contains P...    27   7.5  
At1g44050.1 68414.m05082 DC1 domain-containing protein contains ...    27   10.0 

>At1g13030.1 68414.m01511 sphere organelles protein-related contains
           weak similarity to Swiss-Prot:Q09003 sphere organelles
           protein SPH-1 (Sphere protein 1) [Xenopus laevis]
          Length = 608

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 565 LIENHSWNTDMNRKLGYPWGS 503
           L+EN  WN +M +K G  WG+
Sbjct: 356 LVENVLWNGNMTKKKGQKWGT 376


>At5g28730.1 68418.m03529 hypothetical protein
          Length = 296

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 1/104 (0%)
 Frame = +1

Query: 274 SKEMICRVCARNGCTPLTEKLNSYDIISAIRSIANITIDLDDSLPKYICTECLDMLKVAL 453
           S E+ C+   R      T+          ++S  NI++D   ++   IC        +AL
Sbjct: 19  SNEVSCQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDIAL 78

Query: 454 NFKTNCETADKKFRKLLNPMGNPAF-YSYPYSKNDFQLILHKMK 582
            F    ET  +KF  +L  M   A  Y  P    + + I ++++
Sbjct: 79  RFGHAQETIWRKFHDVLKAMERLAVEYIRPRKVEELRAISNRLQ 122


>At1g35650.1 68414.m04431 Ulp1 protease family protein PF02902: Ulp1
           protease family, C-terminal catalytic domain; similar to
           At1g21020, At3g26530, At1g08760, At1g08740, At2g29240
          Length = 736

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 271 LSKEMICRVCARNGCTPLTEKLNSYDIISAIRSIANITIDLDD 399
           ++   + R  +R+G  P +E++ SY  +S I  IAN  +D +D
Sbjct: 1   MTNNSLPRRLSRSGSEPNSERVQSYSELSLIDDIAN-ALDAED 42


>At1g35770.1 68414.m04447 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 968

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 604 VQSSAV*FSSYVKLIENHSWNT-DMNRKLGYPWGSII 497
           V    V  S Y K+I++H+    D++  L YPWG ++
Sbjct: 169 VDGFLVPISHYPKIIKSHAEMVEDVDAFLAYPWGGLL 205


>At1g44050.1 68414.m05082 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 530

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 319 PLTEKLNSYDIISAIRSIANITIDLDDSLPKYICTECLDMLKVALNFK 462
           P+T+ ++   + S      ++ I L++SL + ICT CL      + FK
Sbjct: 469 PITDYISVITLTSKGTKRKDLWIFLNNSLTRPICTTCLSRCPFPIFFK 516


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,119,933
Number of Sequences: 28952
Number of extensions: 234836
Number of successful extensions: 578
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)