Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j09
         (517 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222289-1|ABN79649.1|   68|Tribolium castaneum adipokinetic hor...    22   3.7  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   3.7  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   6.5  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   6.5  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   8.6  

>EF222289-1|ABN79649.1|   68|Tribolium castaneum adipokinetic
           hormone 2 protein.
          Length = 68

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 276 LVYSASGLCSAGFNGTISWTK 214
           L+ +  GLC+A  N T +W K
Sbjct: 9   LLITIVGLCAAQLNFTPNWGK 29


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 295 RDCSRSYISLCNERTHKFSAASSC 366
           R  ++SY  L +ERTH      SC
Sbjct: 87  RQFTKSYNLLIHERTHTDERPYSC 110


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/26 (26%), Positives = 13/26 (50%)
 Frame = -2

Query: 414 CSSGCFPSTCSNLEAVTRACSREFVR 337
           CS+   P    NL+ +   C ++ +R
Sbjct: 309 CSNFTLPEIQHNLDVLVDMCEQDIIR 334


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 131 MFEVETDNYTPLMLTIEVIFTE 196
           M+ ++ DN    +LT  VIF+E
Sbjct: 446 MYSMKVDNAEYALLTAIVIFSE 467


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 485 TYQSPTVL*KCSSI*TMGS 429
           TY S +V+  CSS+ T  S
Sbjct: 95  TYSSRSVMTSCSSVPTTAS 113


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,153
Number of Sequences: 336
Number of extensions: 2634
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)