Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10j09
(517 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 27 1.7
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 27 2.2
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe... 26 2.9
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 26 3.8
SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomy... 26 3.8
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom... 25 5.1
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha... 25 5.1
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c... 25 6.7
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 25 8.9
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 8.9
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +1
Query: 205 TGRFSPGNSSIKACRTKSRSGVHKMAS*MLRDCSRSYISLCN 330
T P + AC T GV K A L C+ +Y +CN
Sbjct: 675 TPYLEPTVEKLVACTTHFYEGVRKSALSSLWRCATTYYKVCN 716
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 26.6 bits (56), Expect = 2.2
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +1
Query: 289 MLRDCSRSYISLCNERTHKFSAASSCHSLQITAS*RETPTGAELWILLPIV-QIEEHF-- 459
++R C Y SLCNE +A ++++ RE L+PI QI HF
Sbjct: 2083 LMRRCDHKYASLCNELKRDDLSADDLSTIKVKLMEREQK-------LMPIYQQISIHFAD 2135
Query: 460 -HSTVG 474
H VG
Sbjct: 2136 LHDRVG 2141
>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 2.9
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = +2
Query: 248 EQSPEAEYTRWLRECYETALARILACV------MKGRTNSRLQALVTASKLLQ 388
EQS E ++ RW+ E T L I + M+ NSR A+ T +++
Sbjct: 85 EQSGEVQFPRWIDEWANTKLGGIFERIFSKMDSMQNDMNSRFDAMQTEMSVMK 137
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 25.8 bits (54), Expect = 3.8
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +2
Query: 158 TPLMLTIEVIFTELLKRGDLVQEI-VPLKPAEQSPEAEYTRWLRECYETALARILACVMK 334
TP + V+ T ++ DL++ + V K SP WL+ Y +ALA + +M
Sbjct: 519 TPCKKNMSVLETLHSQQRDLMEIVLVAFKYLHLSPSNRLQLWLKVAYCSALADLYELLMC 578
Query: 335 GRTNSRL 355
S L
Sbjct: 579 NEKMSNL 585
>SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 231
Score = 25.8 bits (54), Expect = 3.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 194 ELLKRGDLVQEIVPLKPAEQSP 259
EL K GD+ +IVP++ E++P
Sbjct: 62 ELSKAGDVTVQIVPIQTLEKAP 83
>SPAC3F10.10c |map3||pheromone M-factor receptor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 346 ICASFHYTS*YTSESSLVAFTKPSCVLRFWTLF 248
IC + Y+S Y + +L+ F P C+L F LF
Sbjct: 141 ICMNGCYSSFYQTWYTLLFFYIPPCLLSFGGLF 173
>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 200 LKRGDLVQEIVPLKPAEQSPEAEYTRWLRECYETALA 310
+K+ ++IVP+ + PEA W+ + YE +A
Sbjct: 378 IKQPGFSRQIVPVTLDVKYPEAFPDTWIHKAYEVVIA 414
>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
complex subunit Rrn5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 556
Score = 25.0 bits (52), Expect = 6.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 101 HANNLADILQMFEVETDN 154
H D+LQ +EVET+N
Sbjct: 33 HDERYLDVLQQYEVETEN 50
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 24.6 bits (51), Expect = 8.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -2
Query: 396 PSTCSNLEAVTRACSREFVR 337
P TCS ++ + C R+F R
Sbjct: 97 PFTCSEIDGLPTGCGRQFSR 116
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 197 LLKRGDLVQEIVPLKPAEQSPEAEYT 274
+L R V+ VP++ AE+ P EY+
Sbjct: 280 ILSRTKSVETPVPMEAAEEEPATEYS 305
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,229,004
Number of Sequences: 5004
Number of extensions: 44100
Number of successful extensions: 137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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