Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10j09
(517 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0941 - 29544252-29544355,29545155-29545299,29545637-295457... 32 0.24
04_03_0834 - 20167554-20167716,20169488-20169598,20169716-201698... 29 1.7
01_01_1231 + 9961783-9961817,9962612-9963161,9964441-9965691 29 2.2
10_07_0017 - 11832733-11832963,11835172-11835550,11836466-11836704 29 2.9
12_01_0684 + 5828947-5829012,5831123-5832103,5832200-5832326,583... 28 3.9
02_05_0732 + 31303289-31304491,31304589-31304867 28 3.9
01_01_1098 - 8691312-8692430,8692640-8693509,8694522-8696105,869... 27 6.8
07_03_1192 + 24698355-24698433,24699312-24699391,24700027-247004... 27 8.9
02_05_1180 + 34776151-34776480,34776578-34776760,34776849-347771... 27 8.9
>04_04_0941 -
29544252-29544355,29545155-29545299,29545637-29545775,
29545836-29545893,29546012-29546123,29546311-29546484,
29547276-29547450,29547531-29547589,29548008-29548109,
29548178-29548212,29549017-29549111,29549638-29549686,
29549754-29549812,29549978-29550051,29550204-29550296,
29550389-29550769
Length = 617
Score = 32.3 bits (70), Expect = 0.24
Identities = 24/128 (18%), Positives = 55/128 (42%), Gaps = 3/128 (2%)
Frame = +2
Query: 56 GQLRNKANEFLNSRKHANNLADILQMFEVET--DNYTPLMLTIEVIFTELLKRGDLVQEI 229
G+++ E L+SR + N+ +L + D +++++ F LL
Sbjct: 25 GEVKTLGEELLSSRANLNHAPTLLALLSPSAPLDLALEALISLQSFFVPLLPSIPSAAAT 84
Query: 230 VPLKPAEQSPEAEYTRWLRECYETALARILACVMKGRTNSRLQALVTASKLLQVE-GKHP 406
+ PE + WLR+ ++ +A ++ + ++ ++ L + + V+ GK
Sbjct: 85 AAAAAGDADPELVFRSWLRKRFDELVAALVELTVSPHSDDAIRDLALDALMDFVKLGKDG 144
Query: 407 LEQSSGYY 430
QS+ Y+
Sbjct: 145 RFQSAIYH 152
>04_03_0834 -
20167554-20167716,20169488-20169598,20169716-20169801,
20169901-20170011
Length = 156
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 129 CNISARLFACFLELRNSFALL 67
CN+ A + C +E+RN FA+L
Sbjct: 26 CNVRAENYICTIEIRNDFAIL 46
>01_01_1231 + 9961783-9961817,9962612-9963161,9964441-9965691
Length = 611
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 490 HGHIRVQQYCENVLQSERWEVISRALL 410
HG + ++Y ENV S R EV+ R LL
Sbjct: 224 HGIYKAEKYIENVPASHRGEVVYRTLL 250
>10_07_0017 - 11832733-11832963,11835172-11835550,11836466-11836704
Length = 282
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = +1
Query: 190 HRTIKT-GRFSPGNSSIKACRTKSR--SGVHKM 279
++T+KT GRFSPGN K R + R G HK+
Sbjct: 35 NKTLKTRGRFSPGNKIGKGTRRQRRQSGGKHKI 67
>12_01_0684 +
5828947-5829012,5831123-5832103,5832200-5832326,
5832623-5832705,5832752-5832917,5833337-5833399,
5833624-5833733,5834227-5834276,5834528-5834664,
5835180-5835281,5835871-5835988,5836575-5836627,
5836710-5836813,5836910-5836972,5837375-5837503,
5837508-5837605,5838446-5838500,5839260-5839311,
5839996-5840113,5841906-5842035,5842156-5842437
Length = 1028
Score = 28.3 bits (60), Expect = 3.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 423 PELCSSGCFPSTCSNLEAVTR 361
P+ GCFP CS+LE + +
Sbjct: 680 PDFTGCGCFPLNCSHLETINQ 700
>02_05_0732 + 31303289-31304491,31304589-31304867
Length = 493
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 296 RSIHEAILCTPLLDFVLQALMELFPGLNRPVLI 198
R I + PLLD++ L E+FP L R VL+
Sbjct: 284 RQIEDGNRDVPLLDYLRFYLPEMFPALRRVVLL 316
>01_01_1098 -
8691312-8692430,8692640-8693509,8694522-8696105,
8696199-8696258,8696336-8696414,8696494-8696555,
8697129-8697204,8697367-8697419,8698181-8698270,
8698411-8698458
Length = 1346
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +2
Query: 203 KRGDLVQEIVPLKPAEQSPEAEYTRWLRECYETALARILACVMKGRTNSRLQALVTASKL 382
++GD E VP+ P E P +Y + RE ++IL + S Q ++ ++
Sbjct: 508 RKGDKAVETVPMLPFEALPAVDYIKLPREQMNAFNSQILQSLSGTFQVSEKQNIIKYLEM 567
Query: 383 LQV 391
L +
Sbjct: 568 LSI 570
>07_03_1192 +
24698355-24698433,24699312-24699391,24700027-24700483,
24700641-24700794,24700878-24701155,24701225-24701517
Length = 446
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 354 CKLLSQPPNYCKLKGNTHWSRALDITSHRSD*RTFSQYCWTLICPCQLH*HV 509
C + P C ++GN+ + ++ + +H D T C + +CP ++H HV
Sbjct: 245 CGCQNNKPGSC-VEGNSPYLASV-VNTHNKDSLTPLVQCTSHMCPIRVHWHV 294
>02_05_1180 +
34776151-34776480,34776578-34776760,34776849-34777198,
34777430-34777631
Length = 354
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -3
Query: 338 VLSLHKLIYEREQSRSIHEAILCTPLLDFVLQALMELFP 222
V H L+YER +R + I +LQ L ELFP
Sbjct: 243 VARAHALVYERHDARGRYLCIGAVLHRAHLLQMLKELFP 281
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,856,048
Number of Sequences: 37544
Number of extensions: 266631
Number of successful extensions: 757
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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