Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10j09
(517 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 3e-08
SB_34818| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_45349| Best HMM Match : rve (HMM E-Value=6.1e-31) 28 5.3
SB_9398| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_22859| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_1639| Best HMM Match : VWA (HMM E-Value=0) 28 5.3
SB_31673| Best HMM Match : rve (HMM E-Value=6.7e-30) 27 6.9
SB_23517| Best HMM Match : WD40 (HMM E-Value=0) 27 9.2
>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 55.2 bits (127), Expect = 3e-08
Identities = 36/160 (22%), Positives = 76/160 (47%), Gaps = 4/160 (2%)
Frame = +2
Query: 50 ISGQLRNKANEFLNSRKHANNLADILQMFEVE-TDNYTPLMLTIEVIFTELLKRGDLV-- 220
I +++ K L + +AN L D++++ + + +D + ++ IF++LLK L
Sbjct: 13 IKREIKEKTQLILETATNANLLVDVIELSDTDRSDVLLCFIKSVHKIFSKLLKENKLFAN 72
Query: 221 -QEIVPLKPAEQSPEAEYTRWLRECYETALARILACVMKGRTNSRLQALVTASKLLQVEG 397
+ + + P+ + WL + Y + ++L C+ K + + AL T K + E
Sbjct: 73 KKSETDNEETTEDPDDVFATWLNDKYIVVVRKLLECMHKTDQSVKELALCTLMKFVIAES 132
Query: 398 KHPLEQSSGYYFPSFRLKNIFTVLLDSDMSMSAPLARFQE 517
K + F + + IF L++ + +M+ +ARF+E
Sbjct: 133 KAKARANKNPTFVNSFFRKIFDGLVNPNHNMAELIARFEE 172
>SB_34818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 444
Score = 29.9 bits (64), Expect = 1.3
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +2
Query: 113 LADILQMFEVETDNYTPLMLTIEVIFT--ELLKRGDLVQEIVPLKPAEQSPEAEYTRWLR 286
+ DI M V T + + +FT E LK G +V EIVPL A + A +WLR
Sbjct: 283 IKDIATMVSVLGRQVTERSVQVGQMFTSEEALKVG-MVDEIVPLGEASAAAMAAMEKWLR 341
>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1957
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 266 EYTRWLREC-YETALARILACVMKGRTNSRLQALVTASKLLQVEGKH 403
E+TR+LREC E ++ L G + + L+ A K+ VEGK+
Sbjct: 1753 EFTRYLRECGIEHRISPPLWPQANGEVERQNRTLLKALKIAAVEGKN 1799
>SB_45349| Best HMM Match : rve (HMM E-Value=6.1e-31)
Length = 298
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 266 EYTRWLREC-YETALARILACVMKGRTNSRLQALVTASKLLQVEGKH 403
E+TR+LREC E + L G + + L+ A K+ VEGK+
Sbjct: 107 EFTRYLRECGIEHRTSPPLWPQANGEVERQNRTLLKALKIAAVEGKN 153
>SB_9398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = +2
Query: 338 RTNSRLQALVTASKLLQVEGKHPLEQSSGYYFPSFRLKNIFTVLLDSDMSMSAPLAR 508
+TNS+ + A+KL G +E S+ Y+FP L+ + + ++ + +++ R
Sbjct: 542 QTNSKYRPDQVAAKLSDPSGNKIVELSTSYFFPEQNLRFLSSPSTENHVDVTSSRVR 598
>SB_22859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1108
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 205 TGRFSPGNSSIKACRTKSRSGVHKMAS*MLRD 300
TG F+P ++ IKA K +SG+ ++ + + RD
Sbjct: 122 TGDFNPPSTGIKASVIKQKSGLSQIVTVLTRD 153
>SB_1639| Best HMM Match : VWA (HMM E-Value=0)
Length = 812
Score = 27.9 bits (59), Expect = 5.3
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +2
Query: 2 LFNTKMAAVQQNFSKMISGQLRNKANEFLNSRKHA--NNLADILQMFEVETDNYTPLMLT 175
LF K A + N++ + SG + K++ F R + + L DI+Q T + TPL +
Sbjct: 408 LFVIKFGA-KSNYTALQSG-VERKSDLFSIPRVESLQSRLGDIVQHVAARTGDPTPLDVQ 465
Query: 176 IEVIF 190
+E++F
Sbjct: 466 LEIVF 470
>SB_31673| Best HMM Match : rve (HMM E-Value=6.7e-30)
Length = 426
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 266 EYTRWLREC-YETALARILACVMKGRTNSRLQALVTASKLLQVEGKH 403
E+TR+LREC E + L G + + L+ A K+ VEGK+
Sbjct: 336 EFTRYLRECGIEHRTSPPLWPQANGEVERQNRLLLKALKIAAVEGKN 382
>SB_23517| Best HMM Match : WD40 (HMM E-Value=0)
Length = 860
Score = 27.1 bits (57), Expect = 9.2
Identities = 20/88 (22%), Positives = 36/88 (40%)
Frame = +2
Query: 98 KHANNLADILQMFEVETDNYTPLMLTIEVIFTELLKRGDLVQEIVPLKPAEQSPEAEYTR 277
+ NNL + + + + +T T + E+ + VQE+ + +S + EYTR
Sbjct: 92 EEVNNLQEKIDELQNLQEKFTSATSTGQEKDVEIERLKIAVQELEEAREKVRSYKLEYTR 151
Query: 278 WLRECYETALARILACVMKGRTNSRLQA 361
R ++ + KG R QA
Sbjct: 152 TKRYLFQENEQAVSESYQKGLAQGRAQA 179
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,488,825
Number of Sequences: 59808
Number of extensions: 335674
Number of successful extensions: 993
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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