Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j09
         (517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41016-4|AAP46275.1|  809|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U41016-2|AAM51496.1|  899|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AF003151-14|AAT68900.1|  399|Caenorhabditis elegans Hypothetical...    29   2.6  
Z81576-3|CAB04641.1|  534|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z81554-1|CAB04506.1|  838|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AF101310-4|AAC69214.2|  662|Caenorhabditis elegans Hypothetical ...    27   8.0  

>U41016-4|AAP46275.1|  809|Caenorhabditis elegans Hypothetical
           protein R11G1.6d protein.
          Length = 809

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +1

Query: 223 GNSSIKACRTKSRSGVHKMAS*MLRDCSRSYISLCNERTHKFSAASSCHSLQI 381
           G ++   C+ + RS   K A    RDC       C+ +T  F   S+   LQI
Sbjct: 734 GGATCNVCQQRIRSSFSKQAY-QCRDCKMVCHKTCHYKTDAFCTQSNVSKLQI 785


>U41016-2|AAM51496.1|  899|Caenorhabditis elegans Hypothetical
           protein R11G1.6a protein.
          Length = 899

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +1

Query: 223 GNSSIKACRTKSRSGVHKMAS*MLRDCSRSYISLCNERTHKFSAASSCHSLQI 381
           G ++   C+ + RS   K A    RDC       C+ +T  F   S+   LQI
Sbjct: 824 GGATCNVCQQRIRSSFSKQAY-QCRDCKMVCHKTCHYKTDAFCTQSNVSKLQI 875


>AF003151-14|AAT68900.1|  399|Caenorhabditis elegans Hypothetical
           protein D1007.10b protein.
          Length = 399

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +2

Query: 164 LMLTIEVIFTELLKR-GDLVQEIVPLKPAEQSPEAEYTRWLRECYETALARILACVM 331
           ++  + VI+  +++R G+L++ +  L   E +   E+ R +RE  +  LA +  C++
Sbjct: 115 MVFCLTVIWFLVIRRMGNLIKRLSVLNQLEDAESVEWARCIREFTQEKLAVLCFCIV 171


>Z81576-3|CAB04641.1|  534|Caenorhabditis elegans Hypothetical
           protein R10E8.4 protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 387 KLKGNTHWSRALDI 428
           KLKGN+HW  A+D+
Sbjct: 411 KLKGNSHWKHAVDL 424


>Z81554-1|CAB04506.1|  838|Caenorhabditis elegans Hypothetical
           protein F57G4.1 protein.
          Length = 838

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 84  FLTPENMRTILLIYCRCLRSKQTII 158
           F TP+ ++T+L++  R +  K+TII
Sbjct: 802 FNTPDTLKTVLILSARSVFGKETII 826


>AF101310-4|AAC69214.2|  662|Caenorhabditis elegans Hypothetical
           protein C39F7.5 protein.
          Length = 662

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = +2

Query: 29  QQNFSKMISGQLRNKANEFLNSRKHANNL-ADILQMFEVETDNYTPLMLTIEVIFTELLK 205
           +Q F K     +      ++ + +   NL +++L+    +   +  L   ++ ++ + LK
Sbjct: 153 EQKFLKFEQDAVEIFLKSYIYNEQWPENLGSEMLEQLCTDFGCFKKLEEDVKHMYKQDLK 212

Query: 206 RGDLVQEIVPLKPAEQSPEA 265
            GDL+ E+V  K  E++ E+
Sbjct: 213 HGDLIIEVVDGKNTEENSES 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,410,304
Number of Sequences: 27780
Number of extensions: 250108
Number of successful extensions: 737
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)