Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j09
         (517 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   5.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.5  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   7.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   10.0 

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 311 RILACVMKGRTNSRLQALVTA 373
           R ++C + GR NS+  A++ A
Sbjct: 156 RTISCPIDGRLNSKQAAVIIA 176


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 311 RILACVMKGRTNSRLQALVTA 373
           R ++C + GR NS+  A++ A
Sbjct: 156 RTISCPIDGRLNSKQAAVIIA 176


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = -3

Query: 158 YNCLFRPQTSAIYQQDCSHVFWS 90
           ++C +   TS +++  C+H+ +S
Sbjct: 138 FDCRYVTTTSGMFEALCNHIKYS 160


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 290  IHEAILCTPLLDFVLQALMELFPGLNRPVLI 198
            I+E  +    L+ VLQA M      N+P+L+
Sbjct: 1010 IYEYQIHPKTLNEVLQADMNALKNFNQPLLV 1040


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 132 ICNISARLFACFLELRN 82
           ICNI  R+++    LRN
Sbjct: 34  ICNICKRVYSSLNSLRN 50


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 128 QMFEVETDNYTPLMLTIEVIFTE 196
           QM+ ++ +N    +LT  VIF+E
Sbjct: 465 QMYAMKVNNAEYALLTAIVIFSE 487


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,326
Number of Sequences: 438
Number of extensions: 3113
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)