Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j09
         (517 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17250.1 68415.m01992 expressed protein weak similarity to Ri...    38   0.003
At5g01400.1 68418.m00053 expressed protein contains low similari...    29   1.4  
At3g01810.1 68416.m00123 expressed protein                             28   3.2  
At4g04220.1 68417.m00598 disease resistance family protein conta...    28   4.3  
At3g49710.1 68416.m05435 pentatricopeptide (PPR) repeat-containi...    27   5.7  
At1g11300.1 68414.m01298 S-locus lectin protein kinase family pr...    27   5.7  
At1g05230.2 68414.m00529 homeobox-leucine zipper family protein ...    27   5.7  
At1g05230.1 68414.m00528 homeobox-leucine zipper family protein ...    27   5.7  
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila...    27   9.9  
At4g23493.1 68417.m03385 expressed protein                             27   9.9  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    27   9.9  
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea...    27   9.9  

>At2g17250.1 68415.m01992 expressed protein weak similarity to
           Ribosome biogenesis protein MAK21 (Swiss-Prot:Q12176)
           [Saccharomyces cerevisiae]
          Length = 577

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
 Frame = +2

Query: 29  QQNFSKMISGQLRNKANEFLNSRKHANNLADILQMFEVET--DNYTPLMLTIEVIFTELL 202
           Q+   K    +L++  ++ L SR H NNL  +L     E+        +L+++  FT LL
Sbjct: 9   QKKNEKYTLKELKSLGHDLLTSRSHINNLPLLLTFVSPESPPQFVVESLLSLQSFFTPLL 68

Query: 203 KRGDLVQEIVPLKPAEQSPEAEYTRWLRECYETALARILACVMKGRTNSRLQALV 367
            +        P     + PE  +  WLR  ++  +  +L  ++  ++   L+ +V
Sbjct: 69  SQLPPTSS-SPSSTKTEDPEVVFKAWLRSKFDEFVKLLLDVLVSQQSEDSLRGIV 122


>At5g01400.1 68418.m00053 expressed protein contains low similarity to
            symplekin SP:Q92797 from [Homo sapiens]
          Length = 1467

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
 Frame = +2

Query: 122  ILQMFEVETDNYTP---LMLTIEVIFTELLKRGDLVQEIVPLKPAEQSPE--AEYTRWLR 286
            ++Q+ +  T+  TP   L+LTI  +F   +K  +++  I+P  P +              
Sbjct: 1002 LIQVLQTLTEGPTPSSELILTIRKLFDTRIKDVEILFPILPFLPRDDVLRIFPHMVNLPM 1061

Query: 287  ECYETALARIL-ACVMKGRTNSRLQALVTASKLLQVEGKHPLEQSSGYYFPSFRLKNIFT 463
            E ++ AL+R+L      G   S  +AL+    +       PL+Q +      F  +  FT
Sbjct: 1062 EKFQVALSRVLQGSSQSGPVLSPSEALIAIHSIDPARDGIPLKQVTDACNTCFAQRQTFT 1121


>At3g01810.1 68416.m00123 expressed protein
          Length = 921

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 18/77 (23%), Positives = 31/77 (40%)
 Frame = -2

Query: 495 ADMDISESNSTVKMFFNLNDGK*YPELCSSGCFPSTCSNLEAVTRACSREFVRPFITQAN 316
           + +DI+ SNS + +F    + K YP         S   NLE+  +    E       +A 
Sbjct: 371 SSLDINRSNSRLSLFSERKEAKVYPNSTHDTTLESKIKNLESRVKKLEGELCEAAAIEAA 430

Query: 315 IRARAVS*HSRSHLVYS 265
           + +      S S  V++
Sbjct: 431 LYSVVAEHGSSSSKVHA 447


>At4g04220.1 68417.m00598 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-2A [Lycopersicon
           pimpinellifolium] gi|3894389|gb|AAC78594
          Length = 811

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/28 (39%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = +2

Query: 377 KLLQVEGKHPLE-QSSGYYFPSFRLKNI 457
           K+L++EG + L+  ++GY FP F+L ++
Sbjct: 303 KVLRLEGNNKLQWNNNGYVFPQFKLTHL 330


>At3g49710.1 68416.m05435 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 721

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 21/82 (25%), Positives = 38/82 (46%)
 Frame = -2

Query: 501 NGADMDISESNSTVKMFFNLNDGK*YPELCSSGCFPSTCSNLEAVTRACSREFVRPFITQ 322
           +G  M+   S   VK F  +      P+ CS  C  S CSNL + ++ C +  +     +
Sbjct: 317 SGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQ-CKQ--IHGLAIK 373

Query: 321 ANIRARAVS*HSRSHLVYSASG 256
           ++I +  +S ++    +Y  SG
Sbjct: 374 SHIPSNRISVNNALISLYYKSG 395


>At1g11300.1 68414.m01298 S-locus lectin protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains S-locus glycoprotein family domain,
           Pfam:PF00954
          Length = 1635

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 398 SLQLAVIWRL*QELAAENLCVLSLHKLIYEREQSRSIHEAILC 270
           S  LA +W +  E    +L    +  L++E+E  + IH  +LC
Sbjct: 698 STLLAYVWSIWNEGEINSLVDPEIFDLLFEKEIHKCIHIGLLC 740


>At1g05230.2 68414.m00529 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           homeobox 1 (GP:12002853) {Picea abies}; Strong
           similarity to Phalaenopsis homeobox protein (gb|U34743)
          Length = 721

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +2

Query: 86  LNSRKHANNLADILQMFEVETDNYTPLMLTIEVIFTELLKRGDLVQEIVPLKPAEQSPEA 265
           +    + NN  D+L+     T++  P+++ + V   E L R  +VQ   PL  +    E 
Sbjct: 222 IGGEAYGNNPNDLLKSITAPTESDKPVIIDLSVAAMEELMR--MVQVDEPLWKSLVLDEE 279

Query: 266 EYTR 277
           EY R
Sbjct: 280 EYAR 283


>At1g05230.1 68414.m00528 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           homeobox 1 (GP:12002853) {Picea abies}; Strong
           similarity to Phalaenopsis homeobox protein (gb|U34743)
          Length = 721

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +2

Query: 86  LNSRKHANNLADILQMFEVETDNYTPLMLTIEVIFTELLKRGDLVQEIVPLKPAEQSPEA 265
           +    + NN  D+L+     T++  P+++ + V   E L R  +VQ   PL  +    E 
Sbjct: 222 IGGEAYGNNPNDLLKSITAPTESDKPVIIDLSVAAMEELMR--MVQVDEPLWKSLVLDEE 279

Query: 266 EYTR 277
           EY R
Sbjct: 280 EYAR 283


>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar to
            CAF protein [Arabidopsis thaliana] GI:6102610; contains
            Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
            Helicase conserved C-terminal domain, PF03368: Domain of
            unknown function, PF00636: RNase3 domain, PF00035:
            Double-stranded RNA binding motif
          Length = 1676

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 137  EVETDNYTPLMLTIEVIFTELLKRGDLVQEIVPLKPAEQSPEAEYTRWL 283
            E + D      L  E+    L +RG+L+ + VPL+  + S  ++ T +L
Sbjct: 872  EFDNDEIRLAELFQEIALKVLFERGELIPDFVPLELQDSSRTSKSTFYL 920


>At4g23493.1 68417.m03385 expressed protein
          Length = 87

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 155 YTPLMLTIEVIFTELLKRGDLVQEIVPLKPA-EQSPEAEYTRWLRECYETALA 310
           +  L+  ++ IFT     G +V+ IVP KP  E   E+E  + + E  E  +A
Sbjct: 4   FPALIEKLKPIFTVSGSNGKVVRTIVPKKPVNENISESETMKKMEETVEPMVA 56


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 21/85 (24%), Positives = 41/85 (48%)
 Frame = +2

Query: 5   FNTKMAAVQQNFSKMISGQLRNKANEFLNSRKHANNLADILQMFEVETDNYTPLMLTIEV 184
           FN  +  + ++  +M+S +  N A+  L+ +  A+    I Q+ ++E   Y+    T E 
Sbjct: 289 FNELVGPLPESVGEMVSVEQLNVAHNMLSGKIPAS----ICQLPKLENFTYSYNFFTGEA 344

Query: 185 IFTELLKRGDLVQEIVPLKPAEQSP 259
                L   D  +  +P +PA++SP
Sbjct: 345 PVCLRLPEFDDRRNCLPGRPAQRSP 369


>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
           family protein similar to signal transducer and
           activator of transcription interacting protein 1
           (GI:15929722) {Mus musculus}; similar to hypothetical
           protein GB:AAD43147 GI:5430747 from (Arabidopsis
           thaliana); contains Pfam PF00400: WD domain, G-beta
           repeat (11 copies, 2 weak)
          Length = 840

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 384 CKLKGNTHWSRALDIT 431
           C+LKG+T W R+LD +
Sbjct: 217 CELKGHTDWIRSLDFS 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,487,550
Number of Sequences: 28952
Number of extensions: 224908
Number of successful extensions: 730
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)