Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j08
         (575 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.5  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   5.7  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 459  LDIKWDLLVKSTMTRAQETAAIIAKHLDKD 548
            + +KW L V++ +T  +ET+ +   H+ K+
Sbjct: 1293 IHVKWPLGVRTNITYIEETSEV---HISKE 1319


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 459  LDIKWDLLVKSTMTRAQETAAIIAKHLDKD 548
            + +KW L V++ +T  +ET+ +   H+ K+
Sbjct: 1293 IHVKWPLGVRTNITYIEETSEV---HISKE 1319


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 147 LSDSTLNHHLQHL 109
           ++  TLN HL+HL
Sbjct: 463 VASETLNEHLEHL 475


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,777
Number of Sequences: 336
Number of extensions: 2214
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14308417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)