Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j08
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos...    42   6e-05
SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate |Schizosacc...    36   0.006
SPAC5H10.03 |||phosphoglycerate mutase family|Schizosaccharomyce...    32   0.069
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz...    29   0.64 
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz...    29   0.64 
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    27   1.5  
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp...    25   6.0  
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc...    25   7.9  

>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 41.9 bits (94), Expect = 6e-05
 Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
 Frame = +3

Query: 345 LFLIRHGQ--YNVQG--ETDKERTLTDLGRIQADLTGQRLASLDIKWDLLVKSTMTRAQE 512
           +FLIRHGQ   N +G  +   +  L + GR+QA L  QRL  LDI  D +  S+M R +E
Sbjct: 3   VFLIRHGQTDQNKRGILQGSVDTNLNETGRLQAKLLAQRLLPLDI--DQIFCSSMKRCRE 60

Query: 513 TAA 521
           T A
Sbjct: 61  TIA 63


>SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 211

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = +3

Query: 393 KERTLTDLGRIQADLTGQRLASLDIKWDLLVKSTMTRAQETAAIIAKHL 539
           K+  L++ G  +A L G+RL S   K+D+   S + RAQ+T  II + +
Sbjct: 30  KDPALSETGIKEAKLGGERLKSRGYKFDIAFTSALQRAQKTCQIILEEV 78


>SPAC5H10.03 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 219

 Score = 31.9 bits (69), Expect = 0.069
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
 Frame = +3

Query: 345 LFLIRHG--QYNVQGETD---KERTLTDLGRIQADLTGQRLASLDIKWDLLVKSTMTRAQ 509
           ++LIRHG  Q+NV  + D   ++  LT  G  Q +   + L S  I  D +V S M R  
Sbjct: 9   VYLIRHGQAQHNVGPDEDHNIRDPVLTSEGIEQCEALAKELESKQIPIDGIVCSPMRRTL 68

Query: 510 ETAAIIAK 533
           +T  I  K
Sbjct: 69  QTMEIALK 76


>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
           Yip12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = -2

Query: 535 CFAIMAAVSCALVIVDLTSRSHFISKDASL*PVRSAWI 422
           C+AI+A V  A V+  L S S ++ KDA    ++S WI
Sbjct: 141 CWAILAVVDLATVLEILESLSSWLEKDAI--DLQSQWI 176


>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
           Yip11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = -2

Query: 535 CFAIMAAVSCALVIVDLTSRSHFISKDASL*PVRSAWI 422
           C+AI+A V  A V+  L S S ++ KDA    ++S WI
Sbjct: 141 CWAILAVVDLATVLEILESLSSWLEKDAI--DLQSQWI 176


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 108 LGAVGGGLAYYQINSGKNEKKYGAYNSWTTNFTPSVKWDK 227
           LG  GGGL YY    G +EK+          ++PS  W++
Sbjct: 106 LGLTGGGLLYYGRRYGPDEKELEKQYP-AAGYSPSDWWNR 144


>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +3

Query: 141 QINSGKNEK--KYGAYNSWTTNFTPSVKWDKNWDHREP 248
           Q N+   EK  K   YN  T  F  +VKW   +DH  P
Sbjct: 103 QYNNPVAEKLLKDAIYNCNTPLFEKNVKWLATFDHSSP 140


>SPBC947.08c |||histone promoter control protein Hpc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 298 NTMRNWKKQEAKLSDIYS*SDMASTMCREKQTKKEPS 408
           N ++  K++ AK+    S  +  +T  +EK TKK  S
Sbjct: 192 NALKEAKRENAKVPKDVSKKEAKTTKSKEKATKKTSS 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,043,343
Number of Sequences: 5004
Number of extensions: 35115
Number of successful extensions: 104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)