Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j08
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0229 - 1771701-1774164,1774694-1774847,1774980-1775055,177...    38   0.008
06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,831...    28   4.6  
06_01_1202 + 10389090-10389140,10389218-10389853,10390355-103904...    28   6.1  

>11_01_0229 -
           1771701-1774164,1774694-1774847,1774980-1775055,
           1775439-1775477,1778516-1778674,1778741-1778851,
           1779014-1779064,1779173-1779256
          Length = 1045

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
 Frame = +3

Query: 345 LFLIRHGQYN------VQGETDKERTLTDLGRIQADLTGQRLASLDIKWDLLVKSTMTRA 506
           L ++RHG+ +      VQG+ D E  L ++G+ QA +  +RLA  + +   +  S + RA
Sbjct: 11  LVVVRHGETSWNASRIVQGQMDPE--LNEIGKQQAVVVARRLAR-EARPAAIYSSDLKRA 67

Query: 507 QETAAIIAKHLD 542
            ETA IIAK  D
Sbjct: 68  AETAEIIAKACD 79


>06_01_1052 +
           8312752-8312862,8312969-8313041,8313285-8313362,
           8313443-8313523,8313706-8313779,8313865-8313919,
           8314031-8314079,8314222-8314359,8314455-8314536,
           8315131-8315209,8315357-8315400,8315479-8315673,
           8316110-8316185,8317427-8317507,8317623-8317703,
           8318128-8318204,8318402-8318499,8318672-8318809,
           8319397-8319478,8319564-8319642,8319885-8319931,
           8320014-8320228,8320330-8320450,8320529-8320648,
           8320731-8320849,8320964-8321036,8321112-8321231,
           8321538-8321606,8321756-8321926,8322004-8322051,
           8322192-8322333,8323244-8323341,8323684-8323828,
           8323928-8324013,8324112-8324222,8324456-8324530,
           8324836-8324901,8325036-8325224,8325315-8325425,
           8326616-8326696,8327192-8327371
          Length = 1385

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 93  IALISLGAVGGGLAYYQINSGKNEKKYGAYNSWTTNFT 206
           I  I LGA+G G+A + + SG +   Y  Y      FT
Sbjct: 326 IGFIGLGAMGFGMASHLLKSGFSVIAYDVYKPTLARFT 363


>06_01_1202 +
           10389090-10389140,10389218-10389853,10390355-10390439,
           10390536-10390654,10391251-10391318,10391401-10391710
          Length = 422

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +3

Query: 129 LAYYQINSGKNEKKYGAYNSWTTNFTPSVKWDKNWDHREPESIV 260
           + Y +++SG+       Y  W ++F     W    + R P SIV
Sbjct: 75  IPYKRVHSGRELAMSKLYGDWDSSFDKLYGWKVEIEKRSPGSIV 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,482,027
Number of Sequences: 37544
Number of extensions: 209701
Number of successful extensions: 511
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)