Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j08
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25298| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_13658| Best HMM Match : MbeD_MobD (HMM E-Value=2.3)                 27   8.3  
SB_5433| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.3  

>SB_25298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +2

Query: 317 KSKKQSCQTSIPDQTWPVQCAGRNRQRKNPHGPR*NPSRPNRSETSILRY 466
           K+ K+    +I  + W  Q A  N+QR + H P  +    +R+    L Y
Sbjct: 160 KTSKRKLSKTITYEQWLEQKAAENQQRHSKHAPEESDQSEHRARKDSLPY 209


>SB_13658| Best HMM Match : MbeD_MobD (HMM E-Value=2.3)
          Length = 529

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +2

Query: 365 PVQCAGRNRQRKNPHGPR*NPSRPNRSETSILRYKMGSTC*IYNDKSTGNCCHY 526
           P QC  +NR+R++ H P    S P +     ++ K+     I+    TG   +Y
Sbjct: 146 PSQCPIKNRERESEHVPLTTMSLPRQQHQFDIQRKLARLGEIHLPTPTGESYNY 199


>SB_5433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 111 GAVGGGLAYYQINSGKNEKKYGAYNSW 191
           G  GGG    + +SGKN K+Y   N W
Sbjct: 46  GGGGGGGGGDEDDSGKNGKEYSGKNKW 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,866,616
Number of Sequences: 59808
Number of extensions: 258520
Number of successful extensions: 539
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)