Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j08
         (575 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    27   0.33 
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    23   5.4  
AF395079-1|AAK97461.1|  371|Anopheles gambiae basic helix-loop-h...    23   7.1  
AF063021-3|AAC16247.1|  484|Anopheles gambiae dopa decarboxylase...    23   9.4  
AF063021-2|AAC16249.1|  515|Anopheles gambiae dopa decarboxylase...    23   9.4  

>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 27.5 bits (58), Expect = 0.33
 Identities = 16/68 (23%), Positives = 28/68 (41%)
 Frame = +3

Query: 18  FHYSNEINDIE*KFTAMGSLSRFHKIALISLGAVGGGLAYYQINSGKNEKKYGAYNSWTT 197
           FH S   +D+     A G+   +H+ A  +  A      Y   +      +YGA+++   
Sbjct: 2   FHTSAAYSDMTAAVVATGNTGSYHQSAAAAAAAAANAPVYVPSSRALPHSQYGAHSA--- 58

Query: 198 NFTPSVKW 221
           NF+    W
Sbjct: 59  NFSAQNGW 66


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 23.4 bits (48), Expect = 5.4
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 205 LQA*NGTRTGTIENQSR*LDQKGQMNQKKRTNTMRNWKKQE 327
           LQA      G  E + +  ++  + ++KK   + +NWKK E
Sbjct: 774 LQAKIADGKGHRERELKSAEEDLKRSKKKSEESRKNWKKHE 814


>AF395079-1|AAK97461.1|  371|Anopheles gambiae basic
           helix-loop-helix transcriptionfactor ASH protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 111 GAVGGGLAYYQINSGKNEKKYGAYNSWTTNFTPS 212
           G  GGG  Y  I  G   + Y  Y   +++ TPS
Sbjct: 233 GTSGGGGCYAPIAGGFKHEPYDIYVDPSSSPTPS 266


>AF063021-3|AAC16247.1|  484|Anopheles gambiae dopa decarboxylase
           isoform 2 protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 554 FNIFV*VLCYNGSSFLC 504
           +N++V V  Y GS+F+C
Sbjct: 271 YNVWVHVDAYAGSAFIC 287


>AF063021-2|AAC16249.1|  515|Anopheles gambiae dopa decarboxylase
           isoform 1 protein.
          Length = 515

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 554 FNIFV*VLCYNGSSFLC 504
           +N++V V  Y GS+F+C
Sbjct: 302 YNVWVHVDAYAGSAFIC 318


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 510,493
Number of Sequences: 2352
Number of extensions: 8984
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 54665910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)