Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j08
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23452-1|AAK31545.2|  284|Caenorhabditis elegans Hypothetical pr...    93   1e-19
Z72511-5|CAD89724.1|  314|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z22178-1|CAA80153.1|  298|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AF304124-1|AAG50237.1|  189|Caenorhabditis elegans 2D42 protein.       27   7.2  
AF016416-3|AAB65276.1|  189|Caenorhabditis elegans Hypothetical ...    27   7.2  

>U23452-1|AAK31545.2|  284|Caenorhabditis elegans Hypothetical
           protein R07G3.5 protein.
          Length = 284

 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 52/115 (45%), Positives = 68/115 (59%)
 Frame = +3

Query: 207 PSVKWDKNWDHREPESIVRPKRSDXXXXXXXXXXXXXXARSKAVRHLFLIRHGQYNVQGE 386
           P  +WDKNWD R+P S+V  K                  ++ A R++FLIRHGQY++  E
Sbjct: 52  PRGEWDKNWDFRDPISLV-DKGKWEKADEEGKKKLIEEKKATATRNIFLIRHGQYHLDHE 110

Query: 387 TDKERTLTDLGRIQADLTGQRLASLDIKWDLLVKSTMTRAQETAAIIAKHLDKDI 551
               + LT LGR QA+L G+RLA+ DIK+  +  STM RA ETA II KHL  D+
Sbjct: 111 V---KMLTPLGREQAELLGKRLANSDIKFTNMTMSTMVRATETANIILKHLPDDL 162


>Z72511-5|CAD89724.1|  314|Caenorhabditis elegans Hypothetical
           protein F55A11.11 protein.
          Length = 314

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 405 LTDLGRIQADLTGQRLASLDIKWDLLVKSTMTRAQETAAIIAK 533
           +T++G+  A L G+ L +  I+  ++  S   R  +TAA IAK
Sbjct: 92  ITNIGKYSAQLIGRALRNRGIEPGVIFCSPTLRTLQTAAAIAK 134


>Z22178-1|CAA80153.1|  298|Caenorhabditis elegans Hypothetical
           protein F54C8.1 protein.
          Length = 298

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 57  FTAMGSLSRFHKIALISLGAVGGGLAYYQINSGKN 161
           FTA  ++     +A++  G +G G+A    +SG N
Sbjct: 2   FTAKCAMQNIRNVAIVGSGQMGSGIAQVTASSGFN 36


>AF304124-1|AAG50237.1|  189|Caenorhabditis elegans 2D42 protein.
          Length = 189

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +1

Query: 241 ENQSR*LDQKGQMNQKKRTNTMRNWKKQEAKLSDIYS*SDMASTMCREKQTKKEP 405
           E  S  LD K  + +KK+  T +  KK+EAKL  + +  +  +T   E     EP
Sbjct: 11  ELSSSLLDMKFMLKKKKQIET-KAAKKKEAKLDQLITEKEAEATCSTEILKSSEP 64


>AF016416-3|AAB65276.1|  189|Caenorhabditis elegans Hypothetical
           protein F29A7.6 protein.
          Length = 189

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +1

Query: 241 ENQSR*LDQKGQMNQKKRTNTMRNWKKQEAKLSDIYS*SDMASTMCREKQTKKEP 405
           E  S  LD K  + +KK+  T +  KK+EAKL  + +  +  +T   E     EP
Sbjct: 11  ELSSSLLDMKFMLKKKKQIET-KAAKKKEAKLDQLITEKEAEATCSTEILKSSEP 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,180,965
Number of Sequences: 27780
Number of extensions: 195686
Number of successful extensions: 476
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)