Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j08
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    24   0.94 
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    23   1.6  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    23   1.6  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    23   1.6  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    23   1.6  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    23   1.6  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    23   1.6  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    23   1.6  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   3.8  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   3.8  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 144 INSGKNEKKYGAYNSWTTNFTPSVKWDKNWDH 239
           I+S  N  KY  YN++  N+     ++ N+++
Sbjct: 315 ISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNN 346


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 144 INSGKNEKKYGAYNSWTTNFTPSVK 218
           I+S  N  KY  YN++  N+  + K
Sbjct: 82  ISSLSNNYKYSNYNNYNNNYNTNYK 106


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 144 INSGKNEKKYGAYNSWTTNFTPSVK 218
           I+S  N  KY  YN++  N+  + K
Sbjct: 82  ISSLSNNYKYSNYNNYNNNYNTNYK 106


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 144 INSGKNEKKYGAYNSWTTNFTPSVK 218
           I+S  N  KY  YN++  N+  + K
Sbjct: 82  ISSLSNNYKYSNYNNYNNNYNTNYK 106


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 144 INSGKNEKKYGAYNSWTTNFTPSVK 218
           I+S  N  KY  YN++  N+  + K
Sbjct: 82  ISSLSNNYKYSNYNNYNNNYNTNYK 106


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 144 INSGKNEKKYGAYNSWTTNFTPSVK 218
           I+S  N  KY  YN++  N+  + K
Sbjct: 82  ISSLSNNYKYSNYNNYNNNYNTNYK 106


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 144 INSGKNEKKYGAYNSWTTNFTPSVK 218
           I+S  N  KY  YN++  N+  + K
Sbjct: 82  ISSLSNNYKYSNYNNYNNNYNTNYK 106


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 144 INSGKNEKKYGAYNSWTTNFTPSVK 218
           I+S  N  KY  YN++  N+  + K
Sbjct: 82  ISSLSNNYKYSNYNNYNNNYNTNYK 106


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +3

Query: 144 INSGKNEKKYGAYNSWTTNFTPSVKWDKNWDHRE 245
           I+S  N  KY  YN++  N+  +   + N ++++
Sbjct: 82  ISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKK 115


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +3

Query: 144 INSGKNEKKYGAYNSWTTNFTPSVKWDKNWDHRE 245
           I+S  N  KY  YN++  N+  +   + N ++++
Sbjct: 82  ISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKK 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,554
Number of Sequences: 438
Number of extensions: 2558
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)