Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j08
         (575 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20050.1 68414.m02510 C-8,7 sterol isomerase identical to C-8...    29   2.2  
At3g11540.2 68416.m01408 gibberellin signal transduction protein...    28   5.1  
At3g11540.1 68416.m01407 gibberellin signal transduction protein...    28   5.1  
At1g48090.2 68414.m05363 C2 domain-containing protein contains P...    27   6.8  
At1g48090.1 68414.m05362 C2 domain-containing protein contains P...    27   6.8  

>At1g20050.1 68414.m02510 C-8,7 sterol isomerase identical to C-8,7
           sterol isomerase GI:11279073 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 38 (5), 807-815 (1998))
          Length = 223

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 248 WFSMVPVLVPFHAWSKICS 192
           W+ ++P L+ F  W KIC+
Sbjct: 187 WWVLIPSLISFRCWKKICA 205


>At3g11540.2 68416.m01408 gibberellin signal transduction protein
           (SPINDLY) identical to spindly GB:AAC49446 (GI:1589778)
           [Arabidopsis thaliana]; contains Pfam profile PF00515
           TPR Domain
          Length = 732

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 129 LAYYQINSGKNEKKYGAYNSWTTNFTPSVKWDKNWDH-REPE 251
           LA   IN G ++K + A+  W   FT       +WD+ ++PE
Sbjct: 257 LAMNYINEGLDDKLFEAHRDWGWRFTRLHPQYTSWDNLKDPE 298


>At3g11540.1 68416.m01407 gibberellin signal transduction protein
           (SPINDLY) identical to spindly GB:AAC49446 (GI:1589778)
           [Arabidopsis thaliana]; contains Pfam profile PF00515
           TPR Domain
          Length = 914

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 129 LAYYQINSGKNEKKYGAYNSWTTNFTPSVKWDKNWDH-REPE 251
           LA   IN G ++K + A+  W   FT       +WD+ ++PE
Sbjct: 439 LAMNYINEGLDDKLFEAHRDWGWRFTRLHPQYTSWDNLKDPE 480


>At1g48090.2 68414.m05363 C2 domain-containing protein contains Pfam
            profile: PF00168 C2 domain
          Length = 3427

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 168  KYGAYNSWTTNFTPSVKWDKNWDHREPESIVRP 266
            K  +Y+  T NF   + WDK  D R P SI RP
Sbjct: 2257 KATSYHVSTPNFE-RIWWDKGGDLRRPVSIWRP 2288


>At1g48090.1 68414.m05362 C2 domain-containing protein contains Pfam
            profile: PF00168 C2 domain
          Length = 4144

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 168  KYGAYNSWTTNFTPSVKWDKNWDHREPESIVRP 266
            K  +Y+  T NF   + WDK  D R P SI RP
Sbjct: 2257 KATSYHVSTPNFE-RIWWDKGGDLRRPVSIWRP 2288


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,439,039
Number of Sequences: 28952
Number of extensions: 179226
Number of successful extensions: 472
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)