Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j07
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t...    83   4e-17
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    55   7e-09
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    27   2.6  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   6.1  
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy...    25   6.1  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   6.1  
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    25   8.0  
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   8.0  

>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
           transport factor Nxt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 82.6 bits (195), Expect = 4e-17
 Identities = 48/120 (40%), Positives = 70/120 (58%), Gaps = 2/120 (1%)
 Frame = +1

Query: 88  YDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQK 267
           Y+A+   F Q YY  FD  + R+ L ++Y  E S ++FEG QLQG   I+EKL SL FQ+
Sbjct: 4   YNALATQFTQFYYQTFD--SDRSQLSSLYR-EESMLSFEGAQLQGTKAIVEKLVSLPFQR 60

Query: 268 ITRIVTAVDSQPM-FDGGVLINVLGRLKCDEDP-PHLYMQTFVLKPLGDSFYVQHDIFRL 441
           +   ++ +D+QP    G V++ V G L  DE+     Y Q F L     ++YV +D+FRL
Sbjct: 61  VQHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLVNNNGNYYVLNDLFRL 120


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 55.2 bits (127), Expect = 7e-09
 Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 4/126 (3%)
 Frame = +1

Query: 91  DAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFM---TFEGVQL-QGAVKIMEKLNSLT 258
           D IG  FVQ+YYT  +    R +    Y  +++ +     E + L  G  +I  K+  L 
Sbjct: 16  DEIGWMFVQEYYTYLNKEPNRLHC--FYTKKSTLIHGDEGESISLCHGQQEIHNKILDLD 73

Query: 259 FQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 438
           FQ    +++ VDS    +GG++I VLG +         + QTF L    + ++V +DIFR
Sbjct: 74  FQNCKVLISNVDSLASSNGGIVIQVLGEMSNKGKLSRKFAQTFFLAEQPNGYFVLNDIFR 133

Query: 439 LGIHDI 456
               D+
Sbjct: 134 FLREDV 139


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = -2

Query: 449 WMPKRKMSC*T*NESPSGFNTNVCMYRCGGSSSHFNLPRTLIKTPPSNIGWESTAVTILV 270
           W  + K  C +   SP G N+++ +YR    +  F++P   I       GW     TI+ 
Sbjct: 383 WSRRYKEFCYSLGYSPEGTNSSLIVYRWPQLTKVFDIPSAAID------GWGQDLRTIMA 436

Query: 269 I 267
           I
Sbjct: 437 I 437


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 395  FNTNVCMYRCGGSSSHFNLPRTLIKTPPSNIGWEST 288
            F+   C+Y    S   F+  R L+  PPS I  +ST
Sbjct: 1267 FSILTCIYNRITSGQGFSYSRLLVYLPPSQIEKKST 1302


>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 106 GFVQQYYTLFDDPAQRANLVNMYNVETSFMTFE-GVQLQGAVKIMEKLNSLTFQ 264
           GF+Q+ YT+FD  + +    N  ++E +  T+  G+ + GA  +    NS  ++
Sbjct: 219 GFIQEDYTVFDGSSIKD---NCSSIEITQWTYNIGLYMAGAAYMYNYTNSTVWK 269


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 567 EKYNVYQMSRILIQQLYVISNFKLSISSCCVCP 469
           E +   +M  +L  +LY ISN  LSI+   + P
Sbjct: 410 EDFTYQRMKTVLDDELYTISNTNLSITDDLLPP 442


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 468 KDRHNTKKCLT*NLI 512
           KD HNTKKCL   LI
Sbjct: 259 KDDHNTKKCLAQLLI 273


>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 95  ASYCGLSAI*IKMCLFVTPTKSPIPAEKFKM 3
           + Y  + AI I+ C F+T  ++PIP + F +
Sbjct: 21  SKYQSIYAIQIR-CFFLTVNRTPIPKQTFSL 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,688
Number of Sequences: 5004
Number of extensions: 51580
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)