Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10j06
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 52 5e-07
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 50 2e-06
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 48 5e-06
07_01_0243 - 1783903-1784658 29 3.1
01_06_1261 - 35826513-35828941,35829201-35829294 28 5.4
08_01_0449 + 3965959-3966081,3966462-3966714,3967188-3967551,396... 28 7.2
08_01_0264 - 2142856-2143152,2143667-2143829,2143915-2143992,214... 28 7.2
07_03_1501 - 27005542-27005976,27006657-27008660 28 7.2
01_01_0538 - 3938389-3939727,3939828-3940203,3940299-3940516,394... 28 7.2
08_01_0447 + 3954917-3954919,3954965-3955217,3955763-3956126,395... 27 9.5
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 51.6 bits (118), Expect = 5e-07
Identities = 26/42 (61%), Positives = 30/42 (71%)
Frame = +3
Query: 513 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVR 638
R AA A KK KS+++LDVKPWDDETDMA LE+AVR
Sbjct: 141 RAAAVKASGKKKES--GKSSVLLDVKPWDDETDMAKLEEAVR 180
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/42 (59%), Positives = 29/42 (69%)
Frame = +3
Query: 513 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVR 638
R AA A KK KS+++LDVKPWDDETDM LE+AVR
Sbjct: 125 RAAAVKASGKKKES--GKSSVLLDVKPWDDETDMTKLEEAVR 164
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = +3
Query: 531 AKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVR 638
+K + K KS+++LDVKPWDDETDM LE+AVR
Sbjct: 124 SKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVR 159
>07_01_0243 - 1783903-1784658
Length = 251
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +1
Query: 337 ACKSVLKPWNHPAVSPLIVFNQKNLQQLLLIRMTKMMMLI 456
+C S++ P P + PL+ +Q +L++LLL + MM+L+
Sbjct: 59 SCPSLVPP---PRLLPLVPLHQSHLRRLLLSLTSSMMVLV 95
>01_06_1261 - 35826513-35828941,35829201-35829294
Length = 840
Score = 28.3 bits (60), Expect = 5.4
Identities = 22/60 (36%), Positives = 33/60 (55%)
Frame = +3
Query: 186 KAYYESLSKMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLE 365
K +ES S+ +V LAG + E+ KVISLE I+ ++N LQ R+++LE
Sbjct: 313 KQKFESSSEASAVH-LAGQVD-EIVDKVISLEIAASSQNAQINRMKNEADELQKRLDSLE 370
>08_01_0449 +
3965959-3966081,3966462-3966714,3967188-3967551,
3967642-3967860,3969106-3969241,3970095-3970346,
3970459-3970752
Length = 546
Score = 27.9 bits (59), Expect = 7.2
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -2
Query: 148 FSCNKAAMLIIPKFRFELYLNTIKT 74
+ CN++A +++PK+ + YL +KT
Sbjct: 319 YMCNESATVLLPKYMKDFYLYYLKT 343
>08_01_0264 -
2142856-2143152,2143667-2143829,2143915-2143992,
2144097-2144162,2144941-2145098
Length = 253
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3
Query: 273 SLENENKDLKKAIDDLRNLVISLQVRVETLE 365
SLE++ K+LK D+LR+ L+V ETLE
Sbjct: 146 SLEDKIKELKAEKDELRDEKQKLKVEKETLE 176
>07_03_1501 - 27005542-27005976,27006657-27008660
Length = 812
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +3
Query: 234 AGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQV 347
AGVP+T+++ +++ + E++ + + +R VI L +
Sbjct: 707 AGVPDTDIAGRLVEILKEHRTPRVKVPRMRRFVIELAI 744
>01_01_0538 -
3938389-3939727,3939828-3940203,3940299-3940516,
3940607-3940769,3940866-3941100,3941186-3941353
Length = 832
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 249 TELSTKVISLENENKDLKKAIDDLRNLVISLQVRVE 356
TEL + L+ +N++ + AI D+ L+I + RVE
Sbjct: 326 TELENEATELKQKNEEERVAIQDMEALLIKRRRRVE 361
>08_01_0447 +
3954917-3954919,3954965-3955217,3955763-3956126,
3956217-3956435,3957734-3957869,3958261-3958362,
3958439-3958690,3958796-3959092
Length = 541
Score = 27.5 bits (58), Expect = 9.5
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -2
Query: 148 FSCNKAAMLIIPKFRFELYLNTIKT 74
+ CN+ A +++PK+ + YL +KT
Sbjct: 279 YMCNETATVLLPKYMKDFYLYYLKT 303
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,231,154
Number of Sequences: 37544
Number of extensions: 210252
Number of successful extensions: 492
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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