Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10j06
(638 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 1e-11
SB_19137| Best HMM Match : Pox_A_type_inc (HMM E-Value=3e-05) 31 0.79
SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 30 1.8
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_30512| Best HMM Match : GLTT (HMM E-Value=0.00058) 27 9.7
SB_28998| Best HMM Match : eIF_4EBP (HMM E-Value=4.5) 27 9.7
SB_8764| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 67.3 bits (157), Expect = 1e-11
Identities = 31/42 (73%), Positives = 35/42 (83%)
Frame = +3
Query: 513 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVR 638
RL AY KKAKK +IAKSNI+LDVKPWDDETDMA +E+ VR
Sbjct: 122 RLKAYEEKKAKKKPVIAKSNIMLDVKPWDDETDMAEMEKLVR 163
>SB_19137| Best HMM Match : Pox_A_type_inc (HMM E-Value=3e-05)
Length = 462
Score = 31.1 bits (67), Expect = 0.79
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +3
Query: 252 ELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLEXXXXXXXXXXXXEKPAAAST 425
+L ++ +SLE ENK LK I+DL +L+ R L EK A + T
Sbjct: 139 KLESEKLSLERENKKLKHQIEDLESLLSHKTARATKLLDTDMKEIQKKLDEKNAVSRT 196
>SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1524
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = +3
Query: 165 NVYNDAEKAYYESLSKMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLR 323
N Y D E E +++ + N EL+ LE LKK IDDLR
Sbjct: 276 NAYVDLEAKGREQFARLQAKYDELVAENAELAENCDLLEKNEARLKKEIDDLR 328
>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2672
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 192 YYESLSKMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVE 356
+YE K++ T K+ LEN KD+++ I++ +N+++S R E
Sbjct: 801 FYELELKLEERLTSHRASELTYEEKINELENAKKDIERGIEEEKNILMSEARRKE 855
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 210 KMDSVATLAGV-PN-TELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLE 365
K D ++ LA P +L K+ +N LK IDDLRN + S + R E +E
Sbjct: 2298 KRDHMSELARAQPQIADLENKLQDAREQNSRLKIEIDDLRNKLSSAKSRYERVE 2351
Score = 29.5 bits (63), Expect = 2.4
Identities = 25/90 (27%), Positives = 44/90 (48%)
Frame = +3
Query: 96 NSNLNFGIISMAALLHEKVWLDRNVYNDAEKAYYESLSKMDSVATLAGVPNTELSTKVIS 275
N+NL +AA K+ L ++ DAEK L K + V A + + + +
Sbjct: 486 NTNLE---AQLAAAQKAKMQLKADL--DAEKDRVNQLRK-EIVGLQAQLSEAQRNAE--K 537
Query: 276 LENENKDLKKAIDDLRNLVISLQVRVETLE 365
+N+N +K IDDL+N + L+ ++ L+
Sbjct: 538 FKNDNVRKQKTIDDLKNTIAQLEDKINALD 567
>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1711
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +3
Query: 159 DRNVYNDAEKAYYESLSKMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVIS 338
+ N Y DA K YE+ +K+++ ELS K + K+L ++ LR+
Sbjct: 1291 ESNNYGDA-KELYETCNKLENEIGTLRESREELSKKYTQSVAKEKELTHLVETLRSNKKQ 1349
Query: 339 LQVRVETLE 365
L++ VE ++
Sbjct: 1350 LELLVEEMK 1358
>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2193
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 276 LENENKDLKKAIDDLRNLVISLQVRVETLE 365
L E KDL K I+DL+ + L++ + TL+
Sbjct: 257 LNQEKKDLVKKINDLKKRITELELIINTLK 286
>SB_30512| Best HMM Match : GLTT (HMM E-Value=0.00058)
Length = 1083
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 258 STKVISLENENKDLKKAIDDLRNLVISLQVRVETLE 365
S K LE EN DL++++ + + + SLQ R LE
Sbjct: 283 SEKYKLLEKENADLRQSVSETQEVANSLQNRNSLLE 318
>SB_28998| Best HMM Match : eIF_4EBP (HMM E-Value=4.5)
Length = 561
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 174 NDAEKAYYESLSKMDSVATLAGVPN--TELSTKVISLENENKDLKKAID 314
+DA K+ ++S AT+A N TEL K S +N+NK + D
Sbjct: 72 SDAIKSASPTISANSRTATVASFKNVETELQQKDASSDNDNKSISSRRD 120
>SB_8764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 276 LENENKDLKKAIDDLRNLVISLQVRVETLE 365
LE +N+DL K + D+R V LQ + E ++
Sbjct: 6 LEGQNEDLVKKMSDMRTRVRELQEQQENMQ 35
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,776,262
Number of Sequences: 59808
Number of extensions: 263744
Number of successful extensions: 616
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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