Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j06
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19510.1 68418.m02324 elongation factor 1B alpha-subunit 2 (e...    52   3e-07
At5g12110.1 68418.m01422 elongation factor 1B alpha-subunit 1 (e...    48   5e-06
At2g18110.1 68415.m02105 elongation factor 1-beta, putative / EF...    48   7e-06
At1g30230.1 68414.m03698 elongation factor 1-beta / EF-1-beta id...    46   2e-05
At4g15545.1 68417.m02375 expressed protein                             31   0.85 
At1g50200.1 68414.m05629 aminoacyl-tRNA synthetase family protei...    31   0.85 
At3g19370.1 68416.m02457 expressed protein                             29   2.0  
At2g22560.1 68415.m02674 kinase interacting protein-related simi...    29   2.0  
At3g58840.1 68416.m06558 expressed protein                             29   2.6  
At3g57990.1 68416.m06463 expressed protein                             29   3.4  
At2g40840.1 68415.m05042 glycoside hydrolase family 77 protein c...    29   3.4  
At2g42005.1 68415.m05196 amino acid transporter family protein l...    28   4.5  
At1g27000.1 68414.m03292 bZIP family transcription factor              28   4.5  
At4g38250.1 68417.m05402 amino acid transporter family protein l...    28   6.0  
At2g18260.1 68415.m02129 syntaxin-related protein, putative (SYP...    27   7.9  

>At5g19510.1 68418.m02324 elongation factor 1B alpha-subunit 2
           (eEF1Balpha2) identical to elongation factor 1B
           alpha-subunit [Arabidopsis thaliana] GI:6686821
          Length = 224

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 22/35 (62%), Positives = 27/35 (77%)
 Frame = +3

Query: 534 KKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVR 638
           K  KKP    KS++++DVKPWDDETDM  LE+AVR
Sbjct: 125 KDTKKPKESGKSSVLMDVKPWDDETDMKKLEEAVR 159


>At5g12110.1 68418.m01422 elongation factor 1B alpha-subunit 1
           (eEF1Balpha1) identical to elongation factor 1B
           alpha-subunit [Arabidopsis thaliana] GI:6686819
          Length = 228

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 21/35 (60%), Positives = 26/35 (74%)
 Frame = +3

Query: 534 KKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVR 638
           K  KK     KS+++L+VKPWDDETDM  LE+AVR
Sbjct: 129 KDTKKTKESGKSSVLLEVKPWDDETDMKKLEEAVR 163


>At2g18110.1 68415.m02105 elongation factor 1-beta, putative /
           EF-1-beta, putative nearly identical to eEF-1beta
           [Arabidopsis thaliana] GI:398606
          Length = 231

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 20/39 (51%), Positives = 28/39 (71%)
 Frame = +3

Query: 522 AYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVR 638
           A + K + K     KS++++D+KPWDDETDM  LE+AVR
Sbjct: 128 AASVKASTKKKESGKSSVLMDIKPWDDETDMKKLEEAVR 166


>At1g30230.1 68414.m03698 elongation factor 1-beta / EF-1-beta
           identical to SP|P48006 Elongation factor 1-beta
           (EF-1-beta) {Arabidopsis thaliana}
          Length = 231

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 19/39 (48%), Positives = 28/39 (71%)
 Frame = +3

Query: 522 AYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVR 638
           A + K + K     KS++++D+KPWDDETDM  LE+AV+
Sbjct: 128 AASVKASTKKKESGKSSVLIDIKPWDDETDMKKLEEAVK 166


>At4g15545.1 68417.m02375 expressed protein
          Length = 337

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +3

Query: 240 VPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLE 365
           + +  LST+V +LE+E+ DL++ + +       LQ  VE+LE
Sbjct: 46  ITSIALSTRVSALESESSDLRELLAEKEKEFEELQSHVESLE 87


>At1g50200.1 68414.m05629 aminoacyl-tRNA synthetase family protein
            contains Pfam profiles: PF01411 tRNA synthetases class II
            (A), PF02272 DHHA1 domain
          Length = 1003

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 21/85 (24%), Positives = 39/85 (45%)
 Frame = +3

Query: 111  FGIISMAALLHEKVWLDRNVYNDAEKAYYESLSKMDSVATLAGVPNTELSTKVISLENEN 290
            F  ++ A+LL  +V         A +    +L      A +      ++ TK+ SL+NE 
Sbjct: 803  FDALNAASLLEREVEDASRAEGSALEKKVSALKSRVDAAIIPAAKKADIRTKIASLQNEV 862

Query: 291  KDLKKAIDDLRNLVISLQVRVETLE 365
            +  +K I + +NL  S+++  E  E
Sbjct: 863  RKAQKKIAE-QNLKKSVKLATEAAE 886


>At3g19370.1 68416.m02457 expressed protein 
          Length = 704

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = +3

Query: 141 HEKVWLDRNVYNDAEKAYYESLSKMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDL 320
           HE   LD N +   E     S+ K    +    +   ++ TK+ +L  EN  LKK++   
Sbjct: 117 HEATRLDNNKFRSIE-----SMKKRQEESACDDL--VDMKTKIQTLAAENTQLKKSLVAK 169

Query: 321 RNLVISLQVR 350
             L +SLQ R
Sbjct: 170 EELAVSLQER 179


>At2g22560.1 68415.m02674 kinase interacting protein-related similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]; weak similarity to Myosin II heavy chain,
           non muscle (Swiss-Prot:P08799) [Dictyostelium discoideum
          Length = 891

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +3

Query: 252 ELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLE 365
           EL  KVISLE+        I  LRN    LQ ++ TLE
Sbjct: 303 ELVNKVISLESAVSSQTALIQRLRNETNGLQTQISTLE 340


>At3g58840.1 68416.m06558 expressed protein
          Length = 318

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +3

Query: 237 GVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLE 365
           GV  TEL  K+  +EN+N++L +   +L+  +  L   +E ++
Sbjct: 19  GVKTTELERKIEDMENKNQELTRENRELKERLERLTGEIEEMK 61


>At3g57990.1 68416.m06463 expressed protein
          Length = 367

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = +3

Query: 252 ELSTKVISLENENKDLKKAIDDLRNLVISLQ 344
           +++  +  L  ENK LK+A++DLR ++ +++
Sbjct: 263 DVAEVIEELRTENKQLKRAVEDLREVISNVR 293


>At2g40840.1 68415.m05042 glycoside hydrolase family 77 protein
           contains Pfam profiles PF02446:
           4-alpha-glucanotransferase, PF00686: Starch binding
           domain; contains a non-consensus AT-AC intron between at
           intron 5
          Length = 955

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +3

Query: 165 NVYNDAEKAYYESLSKMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVI 335
           N  N+ +K  YE     ++   +     + L+ K + LENE+K  +   D LRN+V+
Sbjct: 632 NFLNETQKDMYEFKEDCNTEKKIVAKLKS-LAEKSLLLENEDKVRRDVFDILRNVVL 687


>At2g42005.1 68415.m05196 amino acid transporter family protein low
           similarity to proton/amino acid transporter 1 [Mus
           musculus] GI:21908024; contains Pfam profile PF01490:
           Transmembrane amino acid transporter protein
          Length = 413

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 109 FRFELYLNTIKTLVHTIKLNFYVNKVNRANLTAI 8
           F F+L LN+IKTL H   L+ + + V+   +  +
Sbjct: 160 FPFQLGLNSIKTLTHLAPLSIFADVVDLGAMAVV 193


>At1g27000.1 68414.m03292 bZIP family transcription factor
          Length = 304

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 252 ELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLE 365
           E++++VIS       L+  ++ L NL+  L  +++TLE
Sbjct: 174 EINSQVISARENISSLEMDLESLHNLITGLDGKLDTLE 211


>At4g38250.1 68417.m05402 amino acid transporter family protein low
           similarity to lysosomal amino acid transporter 1 [Rattus
           norvegicus] GI:14571904; contains Pfam profile PF01490:
           Transmembrane amino acid transporter protein
          Length = 436

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 109 FRFELYLNTIKTLVHTIKLNFYVNKVNRANLTAI 8
           F F+L LN+IKTL H   L+ + + V+   +  +
Sbjct: 181 FPFQLGLNSIKTLTHLAPLSIFADIVDLGAMAVV 214


>At2g18260.1 68415.m02129 syntaxin-related protein, putative
           (SYP112) similar to SP|Q42374 Syntaxin-related protein
           KNOLLE (Syntaxin 111) (AtSYP111) {Arabidopsis thaliana}
          Length = 285

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +3

Query: 177 DAEKAYYESLSKMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVE 356
           D EK    S S  D V T    P  +L TK         D+K++++ L  + + + V VE
Sbjct: 185 DMEKMISGSGSCSDLVKTFEVKPEMDLKTK--ERHEAVNDIKRSLNRLHQVFLDMAVLVE 242

Query: 357 T 359
           T
Sbjct: 243 T 243


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,152,968
Number of Sequences: 28952
Number of extensions: 187164
Number of successful extensions: 517
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)