Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j05
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.5  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    26   5.9  
SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.9  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    25   7.8  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   7.8  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    25   7.8  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -3

Query: 611 VSLKTGLFSKLLRFSIA*DSDEQFPSENIINGDLFFLGSSFRMFSENL 468
           +     L+   LRF IA  SD  FP   + N    FL   +   SE++
Sbjct: 463 MKFSVSLYEPALRFLIASKSDSDFPGMLVANLSSMFLDIKYSPSSEHI 510


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 323 CFWSESLYLLTTFLPKVTKTLASSLSFETPRKL 225
           CFW ES +     +  + KT+ ++LS +  R+L
Sbjct: 250 CFWDESNHQEIANISDMWKTIRAALSLKNMRQL 282


>SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 107

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -1

Query: 676 FSLCSICNHYIFHSKIYQQWFRFL*KQVCFQNFYGS-QLHKIVMNNFHQRILLMVISFSL 500
           +S  SIC+HY F    Y+  F  L   V + +  GS  L +I    + +RI+L   + +L
Sbjct: 41  YSTNSICSHYQFFGGHYES-FELLVVIVYYFSHVGSFSLAEIYRITWDKRIVLYGTTTTL 99

Query: 499 AAVSE 485
              SE
Sbjct: 100 VYCSE 104


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 343 KDHITSAVIYDDTNGNYIGVFNNNIIKTWQEDSANLDKSKKFKFSL 480
           K H+ S V ++D+N   I  F+       +E  AN+  +K  K  +
Sbjct: 13  KTHVESIVKFEDSNRGTITDFHIETANNEEEKDANVILNKSVKMEV 58


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 232 LGVSKDKEDANVLVTLGRNVVNKYRL 309
           +G S  ++ AN+++ + RN +NKY L
Sbjct: 588 IGDSDMEDRANIILGIERNALNKYML 613


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 669 YVAYAITIFSIVRYINNGFGFFENRFVFKTF 577
           Y+AYA  IF+ +    NG+  F + F +++F
Sbjct: 456 YIAYASLIFTGLITFFNGYNAFIHGFKYRSF 486


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,859,168
Number of Sequences: 5004
Number of extensions: 59855
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)