Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j05
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4492| Best HMM Match : PPI_Ypi1 (HMM E-Value=3.8)                   30   2.0  
SB_42582| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)                  28   8.1  

>SB_4492| Best HMM Match : PPI_Ypi1 (HMM E-Value=3.8)
          Length = 276

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 556 SYAIENRKSFENKPVFKE 609
           S+A+ NR  FENKP FK+
Sbjct: 79  SFALRNRHDFENKPFFKD 96


>SB_42582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 939

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 523 IIFSDGNCSSLSYA-IENRKSFENKPVFKET 612
           IIFSD NC ++++  I NRK  +N   +  T
Sbjct: 783 IIFSDKNCKTMAFRDIHNRKILKNHTTYNIT 813


>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
          Length = 1093

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
 Frame = +1

Query: 151 IDIET*RTMAKFH-NYYVLCPLIDQKSFLGVSKDKEDANVLVTLG-RNVVNKYRLSDQKQ 324
           IDI T   ++ FH N YV C          V     D NV +T G RN +  + +    +
Sbjct: 275 IDIHTGCQVSLFHQNDYVTC----------VQYHPIDRNVFLTGGARNGIKSWDIRTGNE 324

Query: 325 VGGWTS-KDHITSAVIYDDTNGNYIGVFN 408
               TS K H +       +NGNY+ +F+
Sbjct: 325 AFTCTSLKVHPSGCQFIAQSNGNYLAIFS 353


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,875,314
Number of Sequences: 59808
Number of extensions: 399185
Number of successful extensions: 976
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)