Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j05
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   1.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.6  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   4.8  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   4.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.3  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = -3

Query: 173 VLYVSISICSTIGNAHKCCLIIK---MHNYVCMYLF 75
           V+Y  I +   +GN   C +I +   MH     YLF
Sbjct: 58  VIYAVIFVTGLVGNVSTCVVIARNKSMHTATNYYLF 93


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 526  IFSDGNCSSLSYAIENRKSFENKPVFKETETIVDISYYGKYSDCICY 666
            + +DG CSSL     +  +  NK V+K+ + IVD S    +     Y
Sbjct: 922  VSNDGGCSSLV----DVSTPVNKKVYKQNDYIVDESSSSSFYSSFLY 964


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 296 LTTFLPKVTKTLASSLSFETPRK 228
           L  F+P VTK+LAS    E  R+
Sbjct: 450 LKPFIPAVTKSLASLTDAENSRR 472


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 223 KSFLGVSKDKEDANVLVTLGRNVVNKYRLSDQKQVGGWTSK 345
           +SF+  S ++   +V   + RN V  + L     +G W S+
Sbjct: 296 RSFVPFSIERSSQSVAEVMDRNGVLFFGLLSDLAIGCWNSE 336


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = -3

Query: 173 VLYVSISICSTIGNAHKCCLIIK---MHNYVCMYLF 75
           ++Y+ I +    GN   C +IIK   M      YLF
Sbjct: 45  IIYMIIFVTGIFGNITTCTVIIKNPAMQTATNYYLF 80


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 284 LPKVTKTLASSLSFETPRKLF 222
           LP V   L  SLS  TPRK +
Sbjct: 427 LPTVMSGLDESLSDVTPRKKY 447


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,978
Number of Sequences: 438
Number of extensions: 4318
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)