Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j05
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57510.1 68416.m06402 endo-polygalacturonase (ADPG1) identica...    33   0.23 
At3g02140.1 68416.m00182 expressed protein                             32   0.41 
At1g54385.1 68414.m06201 expressed protein ; expression supporte...    29   2.2  
At5g57260.1 68418.m07152 cytochrome P450 71B10 identical to cyto...    27   8.8  

>At3g57510.1 68416.m06402 endo-polygalacturonase (ADPG1) identical
           to endo-polygalacturonase [Arabidopsis thaliana]
           GI:2597824
          Length = 431

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 24/84 (28%), Positives = 37/84 (44%)
 Frame = +1

Query: 211 LIDQKSFLGVSKDKEDANVLVTLGRNVVNKYRLSDQKQVGGWTSKDHITSAVIYDDTNGN 390
           L+    F G  K   +  +L TL  +     + SD K    W   + + +  I    +G 
Sbjct: 112 LLKSTRFRGPCKSLRNFQILGTLSAST----KRSDYKDKNHWLILEDVNNLSI----DGG 163

Query: 391 YIGVFNNNIIKTWQEDSANLDKSK 462
             G+ N N  KTW ++S  +DKSK
Sbjct: 164 STGIINGNG-KTWWQNSCKIDKSK 186


>At3g02140.1 68416.m00182 expressed protein
          Length = 319

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
 Frame = +1

Query: 130 ALPMVEHIDIET*RTMAKFHNYYVLCPLIDQKSFLGVSKDKEDANVLVTLGRNVVNKYRL 309
           +LP+V  +DIE  R +++    ++  P+ ++ ++L  +KDK     + T       ++++
Sbjct: 133 SLPVVTEMDIEKERKVSEKTRAFMESPVTNRGAYL--TKDKNRGQAVETEKPRAFLEFKI 190

Query: 310 SDQKQVGGWTSKDH--ITSAVIYDDTNGNYIGVFNNNIIKTWQEDSANL 450
              K+  G   KD   +T  V     NGN      NN+  +  E + N+
Sbjct: 191 PPTKE--GKKEKDRLVVTGPVNGKGKNGNTAKKQKNNVENSGMEKARNI 237


>At1g54385.1 68414.m06201 expressed protein ; expression supported
           by MPSS
          Length = 560

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -3

Query: 620 MVSVSLKTGLFSKLLRFSIA*DSDEQFPSENIINGDLF--FLGSSFR 486
           +V +SLK GLFS++ + S         P +   NGD F  FL  S R
Sbjct: 375 VVDISLKDGLFSRVTKGSTTVSDSPLVPYDTCENGDEFEGFLMESLR 421


>At5g57260.1 68418.m07152 cytochrome P450 71B10 identical to
           cytochrome P450 71B10 (SP:Q9LVD2) [Arabidopsis thaliana]
          Length = 1483

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 238 LQENFFDLSVDTKHSNYEILPW 173
           L E F D  +D K  +YE+LP+
Sbjct: 415 LPERFMDCDIDVKGQDYELLPF 436


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,093,243
Number of Sequences: 28952
Number of extensions: 280636
Number of successful extensions: 727
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)