Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j04
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...   135   5e-33
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    42   6e-05
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    33   0.028
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ...    33   0.037
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    29   0.46 
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    28   1.4  
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    28   1.4  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    28   1.4  
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch...    27   1.8  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    27   1.8  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    27   1.8  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   4.3  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    26   4.3  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   5.6  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    26   5.6  

>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score =  135 bits (327), Expect = 5e-33
 Identities = 61/159 (38%), Positives = 97/159 (61%), Gaps = 1/159 (0%)
 Frame = +3

Query: 171 MKFNYKFQNLLGTVYRKGDVLFSKDGNCVISPVGNRITIYNLKQNKSNTLSFESHYNYTA 350
           MK  + F NL+GT++ KG+++F+ DG  ++SPVGNR+++YNLK N S T  FE+H N + 
Sbjct: 1   MKTEFGFSNLVGTIFSKGNLVFTPDGFSILSPVGNRVSVYNLKDNTSYTFPFENHKNISH 60

Query: 351 VDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKYFAVCCDNTVF 530
           + ++P    LL+V E+G   + +     VLH + FK  V A++FSP+GK+FAV     + 
Sbjct: 61  IALSPTSTLLLSVDEEGRCILCNFLRRSVLHYFNFKSPVGAIEFSPNGKFFAVSLGKLIQ 120

Query: 531 VMTAPVHF-TGEYRPFIMKRVFKKALDEVTCLDWSSCSR 644
           V   P      E+ PF++ R +    D++  + WS+ SR
Sbjct: 121 VWRTPNSLEEREFAPFVLHREYTGHFDDIVSISWSADSR 159


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
 Frame = +3

Query: 234 FSKDGNCVISPVGNR-ITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMTLLAVTEKGEAQ 410
           FSKDG  ++S  G+R + +++++  +   L   +    T V  +P+G  + A +     +
Sbjct: 384 FSKDGKTLVSGSGDRTVCLWDVEAGEQK-LILHTDDGVTTVMFSPDGQFIAAGSLDKVIR 442

Query: 411 IISLTTSVVLHKYKFKQQVNAVKFSPDGKYF-AVCCDNTV 527
           I + + ++V   +  ++ V +V FSPDGKY  +   DNT+
Sbjct: 443 IWTSSGTLVEQLHGHEESVYSVAFSPDGKYLVSGSLDNTI 482



 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 435 VLHKYKFKQQVNAVKFSPDGKYFAVCCDNTVFV 533
           +LH  +    +  V+FS DGK+ A  C+    V
Sbjct: 280 LLHTLEHTSVICYVRFSADGKFLATGCNRAAMV 312



 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 465 VNAVKFSPDGKYFA 506
           V +V FSPDGKY A
Sbjct: 337 VRSVAFSPDGKYLA 350


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 33.5 bits (73), Expect = 0.028
 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
 Frame = +3

Query: 162 LVTMKFNYKFQNLLGTVYRKGDVLFSKDGNCVISPVGNRIT-IYNLKQNKSNTLSFESHY 338
           L T K  Y F      +Y    + FS +G  ++S  G+R   +++++  +   L  E   
Sbjct: 389 LSTQKVRYVFSGHEQDIY---SLDFSHNGRFIVSGSGDRTARLWDVETGQC-ILKLEIEN 444

Query: 339 NYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPD 491
             TA+ I+PN   +   +     ++ S++ ++V      K+ V ++ FSPD
Sbjct: 445 GVTAIAISPNDQFIAVGSLDQIIRVWSVSGTLVERLEGHKESVYSIAFSPD 495



 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 435 VLHKYKFKQQVNAVKFSPDGKYFAVCCDNTVFV 533
           ++H  +    V  VKFS +GKY A  C+    V
Sbjct: 306 LVHTLEHPSVVCCVKFSNNGKYLATGCNQAANV 338


>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 314

 Score = 33.1 bits (72), Expect = 0.037
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = +3

Query: 330 SHYNYT----AVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGK 497
           SHY +T    AV I+P+G    +    G   +  L  S  L+  + K  +NA+ FSP+  
Sbjct: 187 SHYGHTGYVSAVTISPDGSLCASGGRDGTLMLWDLNESTHLYSLEAKANINALVFSPNRY 246

Query: 498 YFAVCCDNTV 527
           +      +++
Sbjct: 247 WLCAATGSSI 256


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
 Frame = +3

Query: 228 VLFSKDGNCVISPVGNRITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMT--LLAVTEKG 401
           VL  + G+ VIS  G  I +++L   +       S++  +   +A N     LL+    G
Sbjct: 213 VLPMQSGSTVISAGGPSIKVWDLVAGRQTPTKKLSNHQKSITCLAMNSENTRLLSGGLDG 272

Query: 402 EAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKYFAVCCDN 521
             +I +++   V+H  K+   + ++  SPD     V   N
Sbjct: 273 HVKIYNISDWKVVHGMKYSGPILSMGLSPDSCNLVVGMSN 312


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 453 FKQQVNAVKFSPDGKYFAV-CCDNTVFV 533
           F   V AVK SPDG++ A    DNTV V
Sbjct: 533 FTDDVLAVKISPDGRFVAASLLDNTVKV 560


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 463 CCLNLYLCNTTEVVRLIICASPFSVTA 383
           CCLN +LC +  ++   +C +  ++TA
Sbjct: 70  CCLNGWLCESNNILVCDVCRNKINLTA 96


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 72   FHDEYGVILYAVVSNIKSKFNRIIT*LRSTLVTMKFNYK 188
            FH E GVI+  V S+ + +FN+ +     TL T  FN K
Sbjct: 1262 FHPEQGVIVAHVTSHPRLRFNQFL----GTLSTFGFNTK 1296


>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 249

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 63 GS*INLEPQCESICFYISC 7
          GS I+LEP+ E+IC + SC
Sbjct: 13 GSPIDLEPESETICHWQSC 31


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 360 APNGMTLLAVTEKGEAQIISLTTSVVLHKY-KFKQQVNAVKFSPDGKYFAV 509
           +P+   L  V+E+G  ++       VL  +  +   +  V +SPDGK+ A+
Sbjct: 331 SPDYQYLALVSERGTLKLFDFVKEHVLDVFHSYFAGLTCVTWSPDGKFIAI 381


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 426 TSVVLHKYKFKQQVNAVKFSPDGKYFAVCCDNTVFVM 536
           T +VL K +  + + A+   P G Y ++   +T+F++
Sbjct: 629 TKLVLSKEQMPRTLKAIALDPQGNYVSLFSKDTLFIL 665


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 33   HIVVLSLFMNRTQFHDEYGVILYAVVSNIKSKFNRII 143
            + + L L+ +R ++ DEYGV+   + S   ++F +I+
Sbjct: 1297 YAIRLDLY-SRDEYQDEYGVLQEEIESTFSNRFLKIL 1332


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 459 QQVNAVKFSPDGKYFAVCCDNTVFVMTAPVH 551
           Q VN V+F+P+G   A   D    ++  P +
Sbjct: 68  QAVNVVRFNPEGNILATAGDEGTIMLWVPTN 98


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 270 GNRITIYNLKQNKSNTLSFESHY 338
           G + T+YN +++  +TLSF+ +Y
Sbjct: 367 GLKQTVYNYQEDPKSTLSFKKNY 389


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 465 VNAVKFSPDGKYFAVCCDNTVFVM 536
           V +V+FSP+G+Y A   D+ V ++
Sbjct: 77  VTSVRFSPNGQYLASGSDDRVVII 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,792,013
Number of Sequences: 5004
Number of extensions: 56614
Number of successful extensions: 181
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)