Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10j04
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0102 - 25589011-25589181,25589269-25589496,25589589-255899... 116 2e-26
05_07_0039 - 27239362-27239478,27240570-27241463 36 0.029
01_01_0774 - 6004040-6004371,6004634-6005215,6005391-6005657,600... 31 0.83
09_02_0319 + 7217262-7217372,7218026-7218121,7218642-7218771,721... 31 1.1
04_04_1592 - 34649484-34649547,34650118-34650186,34650325-346504... 30 1.5
03_06_0003 + 30921197-30921388,30921514-30921632,30921742-309218... 30 1.5
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 30 1.9
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 30 1.9
07_03_0482 + 18589573-18589728,18589889-18590065,18590518-185906... 29 2.5
03_02_0099 - 5614007-5614233,5614725-5614998,5615086-5616179,561... 29 3.3
09_02_0587 - 10948888-10949124,10949281-10949393,10949830-109502... 29 4.4
04_01_0492 + 6476586-6476873,6477414-6477686,6477769-6477948,647... 28 5.9
>05_06_0102 -
25589011-25589181,25589269-25589496,25589589-25589933,
25590406-25590777,25590957-25591049,25591150-25591401,
25592019-25593224
Length = 888
Score = 116 bits (279), Expect = 2e-26
Identities = 63/157 (40%), Positives = 86/157 (54%)
Frame = +3
Query: 180 NYKFQNLLGTVYRKGDVLFSKDGNCVISPVGNRITIYNLKQNKSNTLSFESHYNYTAVDI 359
NY+F NLLG YR GD +F+ D + ++S VGNR+ +L + S TL FES N T + +
Sbjct: 2 NYRFHNLLGAPYRGGDAVFAGDSSVLLSAVGNRVASTDLSASSSLTLPFESSSNVTRLAV 61
Query: 360 APNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKYFAVCCDNTVFVMT 539
+P+G LL+V + G A +L VLH+ FK +AV+FSPDG AV V +
Sbjct: 62 SPSGDFLLSVDDAGRALYANLGRRAVLHRIAFKSAPSAVRFSPDGNLIAVAVGKLVQIWR 121
Query: 540 APVHFTGEYRPFIMKRVFKKALDEVTCLDWSSCSRLL 650
+P F E+ PF + R VT DWS S L
Sbjct: 122 SPA-FRKEFFPFHLLRTIPGFAAGVTAFDWSPDSSFL 157
>05_07_0039 - 27239362-27239478,27240570-27241463
Length = 336
Score = 35.9 bits (79), Expect = 0.029
Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 3/129 (2%)
Frame = +3
Query: 279 ITIYNLKQNKSNTLSFESHYNYT-AVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKF 455
+ ++NL K T E H Y AV ++P+G + + G + LT +L+K
Sbjct: 192 VKVWNLTNCKLRT-KLEGHNGYVNAVAVSPDGSLCASGGKDGTTLLWDLTEGKMLYKLDA 250
Query: 456 KQQVNAVKFSPDGKYFAVCCDNTVFVMTAPVHFT-GEYRPFIMKRVFKKALDEVTCLDWS 632
++++ FSP+ + +++V + + +P + + FK + T L WS
Sbjct: 251 GAIIHSLCFSPNRYWLCAATEDSVKIWDLESKLVMQDLKPEV--QAFKSQMLYCTSLSWS 308
Query: 633 S-CSRLLAG 656
+ S L AG
Sbjct: 309 ADGSTLFAG 317
>01_01_0774 -
6004040-6004371,6004634-6005215,6005391-6005657,
6005845-6006163
Length = 499
Score = 31.1 bits (67), Expect = 0.83
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -2
Query: 598 FLKTRFMMKGRYSPVKCTGAVITNTVLSQHTAKYFPSGL-NLTAFTCCLNLYLCNTTEVV 422
F++ + ++ R + KC G V+ + + + H P GL + T T C +++ + T V
Sbjct: 187 FIEEKILVAHRLAMEKCNGVVVASAIFNDHDKIRQPKGLGSETLRTVCFFMFIDDATHRV 246
>09_02_0319 +
7217262-7217372,7218026-7218121,7218642-7218771,
7219137-7219225,7219764-7219832,7220229-7220286,
7220374-7220489
Length = 222
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 366 NGMTLLAVTEK-GEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKYFAV 509
+G T +AV K E I+ + LHK+KF ++N + ++ G F +
Sbjct: 132 HGGTQIAVGNKEDELTIVDVRKLKALHKFKFNYEINEIAWNKTGDLFFI 180
>04_04_1592 -
34649484-34649547,34650118-34650186,34650325-34650444,
34650630-34650742,34650824-34650898,34651224-34651346,
34651427-34651446,34652354-34652410,34652922-34653860,
34653961-34654189,34654296-34654439,34654527-34654601,
34655363-34655433,34656103-34656205,34656407-34656633,
34656791-34656908,34657239-34657369,34657709-34657802
Length = 923
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +3
Query: 279 ITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYK-F 455
I +++L++ K N +VD P G + + +I + +H YK
Sbjct: 105 IKLWDLEEAKIVRTLTGHRSNCMSVDFHPFGEFFASGSLDTNLKIWDIRRKGCIHTYKGH 164
Query: 456 KQQVNAVKFSPDGKY 500
+ VNA++F+PDG++
Sbjct: 165 TRGVNAIRFTPDGRW 179
>03_06_0003 +
30921197-30921388,30921514-30921632,30921742-30921811,
30922078-30922161,30922258-30922344,30922431-30922501,
30922648-30922702,30923374-30923509,30925009-30925103,
30925203-30925357,30925435-30925543,30925761-30925817,
30925913-30926027,30926177-30926264,30926738-30927501,
30927600-30927688,30928315-30928422,30928550-30928657,
30928887-30928977,30929235-30929287,30929557-30929712,
30930763-30930825,30931491-30931535,30932075-30932130,
30933051-30933132,30933238-30933354,30933428-30933530,
30933912-30934062,30934180-30934417,30934564-30934764,
30934850-30934935,30935036-30935135
Length = 1347
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +3
Query: 441 HKYKFKQQVNAVKFSPDGKYFA 506
H K V KFSPDGKYFA
Sbjct: 122 HVSDHKNVVRCAKFSPDGKYFA 143
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = +3
Query: 450 KFKQQVNAVKFSPDGKYFAVCCDNTVFVMTAPVHFTGEYRPFIMKRVFKKALDEVTCLDW 629
K +VNA+K+ P G A C D+ + + F P +++ F +L VT
Sbjct: 460 KKNSEVNAIKWDPTGSLLASCSDDWTAKTVSVMTFYTNPIPSVVQSYFILSLGGVTRTSH 519
Query: 630 SSC 638
C
Sbjct: 520 KRC 522
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 438 LHKYKFKQQVNAVKFSPDGKYFAVCCDNTVFV 533
+HKY F ++ AV+ S D YF V + T+ V
Sbjct: 296 IHKYNFTSEIRAVRLSKD--YFVVVLEKTINV 325
>07_03_0482 +
18589573-18589728,18589889-18590065,18590518-18590688,
18590913-18591029,18591614-18591742,18592210-18592311,
18592412-18592498,18592585-18592638,18594880-18595016,
18595181-18595235,18596133-18596188,18596275-18596334,
18596442-18596529,18596634-18597371,18597451-18597511,
18598301-18598403,18599180-18599311,18599393-18599477
Length = 835
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 509 VLR*YSIRDDSTGTFHRRIPALHHETCLQESPRRSDVSGLVVLLE 643
+L+ YSIR+D F R+ H+ + E P R + + V ++
Sbjct: 257 LLQQYSIRNDGGEEFRERVEPYMHQVLMYEDPMRQEAARKTVPMD 301
>03_02_0099 -
5614007-5614233,5614725-5614998,5615086-5616179,
5616674-5616772,5617371-5617389
Length = 570
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 12/75 (16%)
Frame = +3
Query: 204 GTVYRKGDVLFSKDGNCVISPVGNR-ITIYN-----------LKQNKSNTLSFESHYNYT 347
GTV + D++FS+DG +++ +R I +Y+ +++ SN +S+ESHY
Sbjct: 217 GTVVK--DIVFSRDGRYLLTNSNDRVIRVYDNLLPVKGSGEEIEKISSNNISYESHYE-- 272
Query: 348 AVDIAPNGMTLLAVT 392
+ NG + LA++
Sbjct: 273 --KLKANGASCLAIS 285
>09_02_0587 -
10948888-10949124,10949281-10949393,10949830-10950293,
10951223-10951766,10951902-10951971
Length = 475
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 453 FKQQVNAVKFSPDGKYFAVCCDNTVFVMTAPVHFTGEYRPFIMKRVF 593
+K + + + PDG+Y D M AP H +G +RP+ R F
Sbjct: 40 YKNPDDGIVYEPDGQYV----DGGENHMVAPEHQSGTFRPYSTVRSF 82
>04_01_0492 +
6476586-6476873,6477414-6477686,6477769-6477948,
6478436-6478696,6479171-6479303,6479404-6479494,
6479921-6480023,6480557-6480660,6480809-6480902,
6480985-6481140,6481224-6481286,6481388-6481453,
6481670-6481870,6481999-6482076,6482165-6482284,
6482382-6482462,6482548-6482633,6482920-6483031,
6483093-6483170,6483306-6483482
Length = 914
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = +3
Query: 390 TEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKYFAVCCDNTVFVMTAPVHFTGEYR 569
T G I+ + V +N + F DG+Y C D+ V+++ FT E
Sbjct: 82 THNGTLHILDFQGNQVKEIAAHTATINDISFDADGEYIGSCSDDGTVVISS--LFTDEKL 139
Query: 570 PFIMKRVFKK-ALD 608
F R K ALD
Sbjct: 140 KFEYHRPMKAIALD 153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,138,197
Number of Sequences: 37544
Number of extensions: 327937
Number of successful extensions: 713
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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