Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j04
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34753| Best HMM Match : WD40 (HMM E-Value=5.3e-20)                  36   0.030
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.091
SB_21841| Best HMM Match : WD40 (HMM E-Value=0.00078)                  34   0.091
SB_21488| Best HMM Match : WD40 (HMM E-Value=3.5e-16)                  32   0.37 
SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)                  32   0.49 
SB_58511| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-22)                 30   1.5  
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)          30   1.5  
SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)              29   4.5  
SB_14705| Best HMM Match : WD40 (HMM E-Value=3.6e-20)                  28   6.0  
SB_55718| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_23227| Best HMM Match : efhand (HMM E-Value=4.8e-26)                28   7.9  
SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_24045| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_34753| Best HMM Match : WD40 (HMM E-Value=5.3e-20)
          Length = 645

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = +3

Query: 348 AVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKF-KQQVNAVKFSPDGKYFAV-CCDN 521
           AV  +P+G ++      G   I+   T   +  YK  K++++ +KFSPDGK+ AV   DN
Sbjct: 191 AVTYSPDGGSIAVGQNDGGFLILEAKTLEKVVGYKDRKEEISDIKFSPDGKFLAVGSHDN 250

Query: 522 TVFVMT 539
            V + T
Sbjct: 251 YVDIYT 256


>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
 Frame = +3

Query: 228  VLFSKDGNCVISPVGNRITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMTLLAVTEKGEA 407
            V  +KD         N + +++L+  +            ++V + P+G  L++  E G  
Sbjct: 1153 VYAAKDDIIASGSNDNTVRLWDLRSQRCIDAIATGDSCVSSVCVNPSGTLLVSGHEDGGC 1212

Query: 408  QIISLTTSVVLHKYK-FKQQVNAVKFSPDGKYFAVCCDNTVFVMTAPVH 551
             +  +T    L  +K       +V+FSPDG +   C  +T  ++    H
Sbjct: 1213 MLYDITAGRTLQFFKPHTADCRSVRFSPDGHHLLSCSYDTSTILMEMQH 1261


>SB_21841| Best HMM Match : WD40 (HMM E-Value=0.00078)
          Length = 360

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +3

Query: 318 LSFESHYNYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSP-DG 494
           LSF   Y   A   + NG  LL+ +      +  + T     KY+F+  ++ V+F P + 
Sbjct: 46  LSFSHRYESRATTWSRNGRKLLSGSNDWNVSVWDILTGECDQKYRFQSPISKVQFHPRNN 105

Query: 495 KYFAVC 512
           K   VC
Sbjct: 106 KVILVC 111


>SB_21488| Best HMM Match : WD40 (HMM E-Value=3.5e-16)
          Length = 675

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
 Frame = +3

Query: 348 AVDIAPNGMTLLAVTEKGEAQIISLTT--SVVLHKYKFKQQVNAVKFSPDGKYFAVCC-D 518
           AV ++    T+    + G   I ++ +  S+   K   +++++ +K+SPDGK  AV   D
Sbjct: 394 AVSVSSTADTIAVGYKDGSFGIFNVKSGESIFFKKRCAQEKISDLKYSPDGKCLAVASHD 453

Query: 519 NTVFVMT 539
           N ++V T
Sbjct: 454 NNIYVYT 460


>SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)
          Length = 874

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 3/128 (2%)
 Frame = +3

Query: 195 NLLGTVYRKGDVLFSKDGNCVIS-PVGNRITIYNLKQNKSNTLSFESHYNYTAVDIAPNG 371
           NL G   +   V++S+D + +IS  +   +  +N+   K    S     +YT+V ++P+G
Sbjct: 269 NLKGHNGKVRQVIWSQDDSKIISCGMDGAVYEWNVYNYKREGESVLKSCSYTSVTVSPDG 328

Query: 372 MTLLAVTEKGEAQIISLTTSVVLHKYKFKQQV-NAVKFSPDGK-YFAVCCDNTVFVMTAP 545
            T  AV    +  I  +  S +L +      V      S  G+  FA     T+  M  P
Sbjct: 329 RTTFAV--GSDRTIKEICDSQILREVPASDMVLTQCVMSRSGRMLFAGTASGTLRAMKFP 386

Query: 546 VHFTGEYR 569
           +   GE++
Sbjct: 387 LTVPGEWQ 394


>SB_58511| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-22)
          Length = 327

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 313 TLYHLKVTTIIQ-LLILHQME*HCWLLRKRVKHKL*VLQLLWCYT 444
           T+ HL + T+ + ++I+H M+  CW+ +KR +     L  +W ++
Sbjct: 103 TVLHLLIGTLDRYVMIVHAMKYRCWVTKKRARR---ALAFIWVFS 144


>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
          Length = 1039

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +3

Query: 231 LFSKDGNCVISPVGNRITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMTLLAVTEKGEAQ 410
           +FSK  +    P GN       + NK+ ++   +  N T  D AP+  TL  + E     
Sbjct: 545 IFSKSSSSATPPPGNNARSKTTESNKNRSV---ARRNLTQGDSAPSAYTLRVIRENLRTS 601

Query: 411 IISLT 425
            +S+T
Sbjct: 602 SLSVT 606


>SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 459

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +3

Query: 342 YTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKYFAVCCDN 521
           YT +  +P+G  L + +      I S  T  ++H ++    +  V++SP G   A C  N
Sbjct: 337 YT-ISFSPDGRYLASGSFDKRVHIWSTQTGNLVHSFQGSGGIFEVQWSPRGDKLAACFSN 395

Query: 522 TVF 530
             F
Sbjct: 396 NTF 398


>SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)
          Length = 1487

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
 Frame = +3

Query: 282  TIYNLKQ-NKSNTLSFESHYNYTAVDIAPNGMTL-LAVTEKGEAQIISLTT-SVVLHKYK 452
            TI+ L   N   TLS  S    +AV + P G  L    T  G+  +    + S +L +  
Sbjct: 1191 TIHELPDFNLIQTLSI-SQQTISAVAVNPTGEWLAFGCTSLGQLLVWEWQSESYILKQQG 1249

Query: 453  FKQQVNAVKFSPDGKYFAVCCDN 521
                +N + +SPDG Y A   D+
Sbjct: 1250 HYYDMNVLAYSPDGNYIATGGDD 1272


>SB_14705| Best HMM Match : WD40 (HMM E-Value=3.6e-20)
          Length = 215

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +3

Query: 327 ESHYNYTAVDIAPNGMTLLAVTEKGEAQIIS-LTTSVVLHKYKFKQQ-VNAVKFSPDGKY 500
           E H     ++ +PNG  L+A  E+    +   ++  ++  K K     VN V+F  D + 
Sbjct: 67  EGHGAVFNIEFSPNGSLLVAACERASFLVFDPVSQQLIKSKRKAHSDCVNCVRFL-DSRS 125

Query: 501 FAVCCDN 521
           F  C D+
Sbjct: 126 FLTCSDD 132


>SB_55718| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 553 KCTGAVITNTVLSQHTAKYFPSGLNLTAFTC 461
           +C GAV+  T L      YFP G ++T +TC
Sbjct: 55  RCYGAVLDKTELE---VLYFPEGGSITDYTC 82


>SB_23227| Best HMM Match : efhand (HMM E-Value=4.8e-26)
          Length = 776

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = -2

Query: 613 TSSRAFLKTRFMMKGRYSPVKCTGAVITNTVLSQHTAKYFPSGLN 479
           +S+R+  KT+ M     S V   GAV   T +SQ+T   FP G N
Sbjct: 413 SSARSSYKTKRMAHS--SLVNTNGAVSFTTDISQYTPDPFPLGAN 455


>SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/89 (21%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
 Frame = +3

Query: 237  SKDGNCVISPVG-NRITIYNLKQN-KSNTLSFESHYNYTAVDIAPNGMTLLAVTEKGEAQ 410
            S DG  +++ V  ++  +++L++  K + L    + + TAV+I      ++  +  G  +
Sbjct: 1360 SCDGKYLVTMVNYSQAMLWDLEKGVKISDLKESDYDSTTAVEINVQANVIVTASGSGGVK 1419

Query: 411  IISLTTSVVLHKYKFKQQVNAVKFSPDGK 497
            +  L+T  ++H+    +Q ++V  + DG+
Sbjct: 1420 VWELSTGKIIHQIP-GEQFSSVFLTEDGR 1447


>SB_24045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 553 KCTGAVITNTVLSQHTAKYFPSGLNLTAFTC 461
           +C GAV+  T L      YFP G ++T +TC
Sbjct: 110 RCYGAVLDKTELE---VLYFPEGGSITDYTC 137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,884,314
Number of Sequences: 59808
Number of extensions: 420579
Number of successful extensions: 981
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)