Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10j04
(668 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 111 5e-25
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 111 5e-25
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 34 0.098
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 34 0.098
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea... 32 0.30
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 32 0.40
At5g41300.1 68418.m05019 receptor-like protein kinase-related co... 31 0.92
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 30 1.6
At3g10690.1 68416.m01286 DNA gyrase subunit A family protein sim... 29 2.1
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 29 2.8
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ... 29 3.7
At5g49950.1 68418.m06185 embryogenesis-associated protein-relate... 29 3.7
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 28 4.9
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 28 4.9
At1g14750.1 68414.m01763 cyclin, putative (SDS) identical to cyc... 28 4.9
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 28 6.5
At5g41290.1 68418.m05018 receptor-like protein kinase-related co... 28 6.5
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 28 6.5
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 28 6.5
At1g15470.1 68414.m01860 transducin family protein / WD-40 repea... 28 6.5
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 28 6.5
At5g07400.1 68418.m00847 forkhead-associated domain-containing p... 27 8.5
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 27 8.5
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 27 8.5
At1g61610.1 68414.m06942 S-locus lectin protein kinase family pr... 27 8.5
At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2 ... 27 8.5
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 111 bits (266), Expect = 5e-25
Identities = 60/150 (40%), Positives = 89/150 (59%)
Frame = +3
Query: 183 YKFQNLLGTVYRKGDVLFSKDGNCVISPVGNRITIYNLKQNKSNTLSFESHYNYTAVDIA 362
++F+NLLG YR G+ + +K+ +ISPVGNR+++ +L +N S TL E+ N + +
Sbjct: 3 FRFENLLGAPYRGGNAVITKNTQ-LISPVGNRVSVTDLSKNHSVTLPLETSTNICRLASS 61
Query: 363 PNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKYFAVCCDNTVFVMTA 542
P+G LLAV E+ I+L VVLH+ FK +V A+KFSP+GK+ AV V + +
Sbjct: 62 PDGTFLLAVDEQNRCLFINLPRRVVLHRITFKDKVGALKFSPNGKFIAVGIGKLVEIWRS 121
Query: 543 PVHFTGEYRPFIMKRVFKKALDEVTCLDWS 632
P F PF R F + D+V L+WS
Sbjct: 122 P-GFRRAVLPFERVRTFANSDDKVVSLEWS 150
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 111 bits (266), Expect = 5e-25
Identities = 60/150 (40%), Positives = 89/150 (59%)
Frame = +3
Query: 183 YKFQNLLGTVYRKGDVLFSKDGNCVISPVGNRITIYNLKQNKSNTLSFESHYNYTAVDIA 362
++F+NLLG YR G+ + +K+ +ISPVGNR+++ +L +N S TL E+ N + +
Sbjct: 3 FRFENLLGAPYRGGNAVITKNTQ-LISPVGNRVSVTDLSKNHSVTLPLETSTNICRLASS 61
Query: 363 PNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKYFAVCCDNTVFVMTA 542
P+G LLAV E+ I+L VVLH+ FK +V A+KFSP+GK+ AV V + +
Sbjct: 62 PDGTFLLAVDEQNRCLFINLPRRVVLHRITFKDKVGALKFSPNGKFIAVGIGKLVEIWRS 121
Query: 543 PVHFTGEYRPFIMKRVFKKALDEVTCLDWS 632
P F PF R F + D+V L+WS
Sbjct: 122 P-GFRRAVLPFERVRTFANSDDKVVSLEWS 150
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 33.9 bits (74), Expect = 0.098
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Frame = +3
Query: 279 ITIYNLKQNKSNTLSFESHYN-YTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYK- 452
+ I+++K +++N F+ H TA+ + NG L E G + L L +K
Sbjct: 377 VKIWDVK-SQANVAKFDGHTGEVTAISFSENGYFLATAAEDG----VRLWDLRKLRNFKS 431
Query: 453 -FKQQVNAVKFSPDGKYFAVCCDNTVFVMTAPV 548
N+V+F P G Y + + TA V
Sbjct: 432 FLSADANSVEFDPSGSYLGIAASDIKVYQTASV 464
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 33.9 bits (74), Expect = 0.098
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Frame = +3
Query: 279 ITIYNLKQNKSNTLSFESHYN-YTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYK- 452
+ I+++K +++N F+ H TA+ + NG L E G + L L +K
Sbjct: 377 VKIWDVK-SQANVAKFDGHTGEVTAISFSENGYFLATAAEDG----VRLWDLRKLRNFKS 431
Query: 453 -FKQQVNAVKFSPDGKYFAVCCDNTVFVMTAPV 548
N+V+F P G Y + + TA V
Sbjct: 432 FLSADANSVEFDPSGSYLGIAASDIKVYQTASV 464
>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
GTP-binding protein beta chain homolog, Nicotiana
tabacum, PIR:T16970
Length = 438
Score = 32.3 bits (70), Expect = 0.30
Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +3
Query: 351 VDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDG-KYFAVCCDNTV 527
+D +++ +E ++ SL+ +L F +NA+ P G ++A D+ +
Sbjct: 181 IDYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDSKI 240
Query: 528 FVMTAPVHFTGEYRPFIMKRVFKKALDEVTCLDWSSCSRLL 650
++ ++ T EY ++ V +K +TCL + + LL
Sbjct: 241 YI--GAINATSEYGTQVLGSVSEKG-KAITCLAYCADGNLL 278
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 31.9 bits (69), Expect = 0.40
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Frame = +3
Query: 168 TMKFNYKFQNLLGTVYRKGDVLFSKDGNCVISPVGNRITIYNLKQNK-SNTLSFESHYNY 344
++K NY+ L Y G + S DG+ + G+ I I + + +T+ ES
Sbjct: 5 SLKKNYRCSRSLKQFYGGGPFIVSSDGSFIACACGDVINIVDSTDSSVKSTIEGESD-TL 63
Query: 345 TAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYK 452
TA+ ++P+ L + + ++ L T + +K
Sbjct: 64 TALALSPDDKLLFSAGHSRQIRVWDLETLKCIRSWK 99
>At5g41300.1 68418.m05019 receptor-like protein kinase-related
contains weak similarity to receptor-like protein kinase
homolog RK20-1 (GI:4530126) [Phaseolus vulgaris];
contains Pfam profile: PF01657 Domain of unknown
function DUF26
Length = 287
Score = 30.7 bits (66), Expect = 0.92
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -1
Query: 110 NNCIKNHTIFIVKLCSVHK 54
NNC+KN TI IVK C+ H+
Sbjct: 98 NNCVKNATIEIVKNCTNHR 116
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 29.9 bits (64), Expect = 1.6
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 456 KQQVNAVKFSPDGKYFA-VCCDNTVFVMTAPVHFTGEYRPFIMKRVFKKALDEVTCLDWS 632
+Q VN V FSPDGK+ A D +V + TG++ VF+ + V + WS
Sbjct: 360 QQLVNHVYFSPDGKWIASASFDKSVRLWNG---ITGQF-----VTVFRGHVGPVYQVSWS 411
Query: 633 SCSRLL 650
+ SRLL
Sbjct: 412 ADSRLL 417
>At3g10690.1 68416.m01286 DNA gyrase subunit A family protein
similar to SP|P94605 DNA gyrase subunit A (EC 5.99.1.3).
{Clostridium acetobutylicum}; contains Pfam profiles
PF00521: DNA gyrase/topoisomerase IV A subunit, PF03989:
DNA gyrase C-terminal domain beta-propeller
Length = 950
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 351 VDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKYFAVC 512
+D+ PN L+AV+EKG + + T + H+ + V ++ F VC
Sbjct: 593 IDVIPNEEMLMAVSEKGYVKRMKADTFNLQHRGTIGKSVGKLRVDDAMSDFLVC 646
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 29.1 bits (62), Expect = 2.8
Identities = 32/157 (20%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Frame = +3
Query: 234 FSKDGNCVISPVGNRITIYNLKQNKSNTL-SFESHYNYTAVDIAPNGMTLLAVTEKGEAQ 410
++ G+C+ + I ++N K++ + + F+ + + D P+ + + + ++Q
Sbjct: 465 YNVSGHCL--QLDGHICLHNKKKSSNKRIIGFQFLLQFDSTD--PSRVMVASA----DSQ 516
Query: 411 IISLTTSVVLHKYKFKQQVN---AVKFSPDGKYFAVCC-DNTVFVMTAPVHFTGEYRPFI 578
+ ++ V+HKYK + + F+ DGK+ C D++V+V H + P
Sbjct: 517 VRIISGRNVVHKYKGSRNAGNQISASFTADGKHIVSACDDSSVYVWNCVGHDPEQSSPGF 576
Query: 579 MK-------RVFKK-ALDEVTCLDWSSCSRLLAGRIE 665
R F+K + D + W + +L+G E
Sbjct: 577 FSHTKRLKIRSFEKFSADVSVAIPWCGFTPVLSGGSE 613
>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to pre-mRNA splicing
factor PRP17 (SP:O60508) [Homo sapiens]
Length = 457
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +3
Query: 279 ITIYNLKQNKSNTLSFESHYNYTAVDI--APNGMTLLAVTEKGEAQIISLTTSVVLHKYK 452
+ ++N+ N + H+N D+ + G++LL+ +++ + V +K
Sbjct: 185 VYVWNVWSNDKKKVRAFLHHNAPVKDVKWSKQGLSLLSCGYDCTSRLFDVERGVETQSFK 244
Query: 453 FKQQVNAVKFSPD 491
+ V VKF PD
Sbjct: 245 EDEVVGVVKFHPD 257
>At5g49950.1 68418.m06185 embryogenesis-associated protein-related
contains weak similarity to Embryogenesis-associated
protein EMB8 (Swiss-Prot:Q40863) [Picea glauca]
Length = 537
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 492 GKYFAVCCDNTVFVMTAPVHFTGEYRPFIMKRVFKKALDEVT-CLDWSSCSRLLAG 656
G+YF ++ + TA + G+ PF KR+ +A D T LDW S ++ G
Sbjct: 78 GRYFPTFWLSSPHLQTAFLTLFGKSPPFSYKRILYQATDGGTIALDWLMHSDVVEG 133
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 28.3 bits (60), Expect = 4.9
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 12/100 (12%)
Frame = +3
Query: 402 EAQIISLTTSVVLHKYKFKQQVN---AVKFSPDGKYFAVCC-DNTVFVMTAPVHFTGEYR 569
++Q+ ++ V+HKYK + + F+ DGK+ C D++V+V H +
Sbjct: 510 DSQVRIISGRNVVHKYKGSRNAGNQISASFTADGKHIVSACDDSSVYVWNCVGHDPEQSS 569
Query: 570 PFIMK-------RVFKK-ALDEVTCLDWSSCSRLLAGRIE 665
P R F+K + D + W + +L+G E
Sbjct: 570 PGFFSHTKRLKIRSFEKFSADVSVAIPWCGFTPVLSGGSE 609
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 28.3 bits (60), Expect = 4.9
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Frame = +3
Query: 429 SVVLHKYKF--KQQVNAVKFSPDGKYFA-VCCDNTVFVMTAPVHFTGEYRPFIMKRV--- 590
+V+ H KF K +FSPDG++ A D + V + +G+ + + +
Sbjct: 202 NVLTHTIKFGKKSHAECARFSPDGQFLASSSVDGFIEVWD---YISGKLKKDLQYQADES 258
Query: 591 FKKALDEVTCLDWSSCSRLLA 653
F D V C+D+S S +LA
Sbjct: 259 FMMHDDPVLCIDFSRDSEMLA 279
>At1g14750.1 68414.m01763 cyclin, putative (SDS) identical to
cyclin-like protein [Arabidopsis thaliana] GI:20302467;
low similarity to SP|P30278 G2/mitotic-specific cyclin 2
(B-like cyclin) (CycMs2 {Medicago sativa}; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 578
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = +3
Query: 216 RKGDVLFSKDGNCVISPVGNRITIYNLKQNKSN---TLSFESHYNYTAVDIAPNGMTLLA 386
++GD + + +CV S G + N+K NK N +SF S + T N +L
Sbjct: 121 KEGDEIEVSESSCVDSNSGAGLRRLNVKGNKINDNDEISF-SRSDVTFAGHVSNSRSLNF 179
Query: 387 VTEKGEAQIISLTTSV 434
+E E+ ++S+ + V
Sbjct: 180 ESENKESDVVSVISGV 195
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +3
Query: 363 PNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKYFAVCCD-NTVFVMT 539
P+G + E I+ + LH+ KF +VN + ++ G +F + TV V++
Sbjct: 118 PDGTHVAVGNRDDELTILDVRKFKPLHRRKFNYEVNEIAWNMPGDFFFLTTGLGTVEVLS 177
Query: 540 AP 545
P
Sbjct: 178 YP 179
>At5g41290.1 68418.m05018 receptor-like protein kinase-related
contains weak similarity to receptor-like protein kinase
homolog RK20-1 (GI:4530126) [Phaseolus vulgaris];
contains Pfam PF01657: Domain of unknown function
Length = 287
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 110 NNCIKNHTIFIVKLCSVHK*T*NHNVNLFV 21
N C+KN TI I K C+ H+ +NV+ V
Sbjct: 94 NACVKNATIEIAKNCTNHREAIIYNVDCMV 123
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +3
Query: 279 ITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYK-F 455
I +++L++ K N +VD P G + + +I + +H YK
Sbjct: 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH 142
Query: 456 KQQVNAVKFSPDGKY 500
+ VN ++F+PDG++
Sbjct: 143 TRGVNVLRFTPDGRW 157
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +3
Query: 279 ITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYK-F 455
I +++L++ K N +VD P G + + +I + +H YK
Sbjct: 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH 142
Query: 456 KQQVNAVKFSPDGKY 500
+ VN ++F+PDG++
Sbjct: 143 TRGVNVLRFTPDGRW 157
>At1g15470.1 68414.m01860 transducin family protein / WD-40 repeat
family protein Strong similarity to gb AF096285
serine-threonine kinase receptor-associated protein from
Mus musculus and contains 5 PF|00400 WD40, G-beta repeat
domains. EST gb|F14050 comes from this gene
Length = 333
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/50 (22%), Positives = 26/50 (52%)
Frame = +3
Query: 378 LLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKYFAVCCDNTV 527
L + T+ G+ ++ + + ++H + K V + + S DG+Y ++V
Sbjct: 156 LSSCTDTGDIRLWDIRSDKIVHTLETKSPVTSAEVSQDGRYITTADGSSV 205
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 279 ITIYNLKQNKSNTLSFESHY-NYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYK- 452
I +++L+++K +F H N +AV+ P G L + + ++ + YK
Sbjct: 31 IKLWDLEESKM-VRAFTGHRSNCSAVEFHPFGEFLASGSSDTNLRVWDTRKKGCIQTYKG 89
Query: 453 FKQQVNAVKFSPDGKY 500
+ ++ ++FSPDG++
Sbjct: 90 HTRGISTIEFSPDGRW 105
>At5g07400.1 68418.m00847 forkhead-associated domain-containing
protein / FHA domain-containing protein
Length = 1084
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +3
Query: 321 SFESHYNYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKY 500
S++S + N + + + G +++SL +LH + QQ+ F+ D +
Sbjct: 354 SYQSSLQAPGKNFYLNRLQYIEQSSTGCQRVVSLPE--LLHPVESIQQIFLATFTSDILW 411
Query: 501 FAVCCD 518
F CCD
Sbjct: 412 FLTCCD 417
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Frame = +3
Query: 318 LSFESHYNYT-AVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYK----FKQQVNAVKF 482
LS H N+ V AP+G + V+ + I T +L + K + AV +
Sbjct: 181 LSSREHSNFVNCVRFAPDGSKFITVSSDKKGIIYDGKTCEILGELSSDDGHKGSIYAVSW 240
Query: 483 SPDGK 497
SPDGK
Sbjct: 241 SPDGK 245
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 366 NGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKY 500
N + + + A++ T VLH ++ K V A FS D KY
Sbjct: 72 NALRAASASADFSAKLWDALTGDVLHSFEHKHIVRACAFSQDTKY 116
>At1g61610.1 68414.m06942 S-locus lectin protein kinase family
protein similar to KI domain interacting kinase 1 [Zea
mays] gi|2735017|gb|AAB93834; contains S-locus
glycoprotein family domain, Pfam:PF00954
Length = 842
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +3
Query: 216 RKGDVLFSKDGNCVISPVGNRITIYNLKQNKSNTLSFESHYNYTAVDIAPNGM 374
+ ++L + N IS G I+N +Q+ +NT+ Y Y A + A G+
Sbjct: 652 KASNILLDTEMNPKISDFG-MARIFNYRQDHANTIRVVGTYGYMAPEYAMEGI 703
>At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2
WD-40 repeats (PF0400);similar to guanine
nucleotide-binding protein beta subunit GPBA (SP:P36408)
[Dictyostelium discoideum (Slime mold)]; similar to
katanin p80 (WD40-containing) subunit B 1 (GI:12655011)
[Homo sapiens]
Length = 418
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = +3
Query: 318 LSFESHYNYTAVDIA--PNG-MTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSP 488
LS E + VDI P+G + L+ + ++ + + ++ VN SP
Sbjct: 199 LSTEDNAITNTVDIYRDPSGSLRLITANNDCKIRVFDAQSFTRVSEFALDWSVNNTSVSP 258
Query: 489 DGKYFAVCCDNT 524
DGK AV D+T
Sbjct: 259 DGKLLAVVGDST 270
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,282,098
Number of Sequences: 28952
Number of extensions: 283051
Number of successful extensions: 766
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -