Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j03
         (546 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0CZ50 Cluster: Chromosome undetermined scaffold_314, w...    33   4.3  
UniRef50_A0BQF1 Cluster: Chromosome undetermined scaffold_120, w...    33   4.3  
UniRef50_Q232C9 Cluster: Putative uncharacterized protein; n=1; ...    32   7.5  
UniRef50_Q89AA5 Cluster: Cytochrome o ubiquinol oxidase subunit ...    32   7.5  
UniRef50_UPI000150A55F Cluster: hypothetical protein TTHERM_0005...    32   9.9  
UniRef50_Q9LCH4 Cluster: Rgg protein; n=2; Streptococcus|Rep: Rg...    32   9.9  
UniRef50_P14546 Cluster: Cytochrome c oxidase subunit 3; n=10; T...    32   9.9  

>UniRef50_A0CZ50 Cluster: Chromosome undetermined scaffold_314,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_314,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 345

 Score = 33.1 bits (72), Expect = 4.3
 Identities = 17/51 (33%), Positives = 30/51 (58%)
 Frame = +1

Query: 124 IIIKMFKIPEWDSYVPKSNIKFSRKTVKAKSQNLILKTETPINIELTNTKQ 276
           ++I   +I E+ +YV  +NIK     ++ + QNL+LK   P NI ++  K+
Sbjct: 282 VLIIRLRIKEFRTYVLLNNIKQFNFIIENRIQNLLLKIVIPDNIVISQKKR 332


>UniRef50_A0BQF1 Cluster: Chromosome undetermined scaffold_120,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_120,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 914

 Score = 33.1 bits (72), Expect = 4.3
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
 Frame = +1

Query: 133 KMFKIPEWDSYVPKSNIKFS---RKTVKAKSQNLILKTETPINIEL-TNTKQFPKSANKV 300
           KM++ P+ +S +PKS +KF+   +K  + K  N I+      ++E     KQF    N+V
Sbjct: 577 KMYQTPQHNSKIPKSPLKFTSIKKKQQQIKKANTIIIENAFESVESERQNKQFITIVNRV 636

Query: 301 NL 306
           N+
Sbjct: 637 NI 638


>UniRef50_Q232C9 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1915

 Score = 32.3 bits (70), Expect = 7.5
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = +1

Query: 130  IKMFKIPEWDSYVPKSNIKFSRKTVKAKSQNLILKTETPINIELTNTKQFPKSANKVNL 306
            + + + PE   Y   S  K S K +K+ SQ   L  E     + T+   FPK ANK+N+
Sbjct: 1269 LNLIETPELSQYYNSSTNKLSLKNIKSGSQIPFLYFELR---DGTSKPIFPKDANKINV 1324


>UniRef50_Q89AA5 Cluster: Cytochrome o ubiquinol oxidase subunit 3;
           n=1; Buchnera aphidicola (Baizongia pistaciae)|Rep:
           Cytochrome o ubiquinol oxidase subunit 3 - Buchnera
           aphidicola subsp. Baizongia pistaciae
          Length = 194

 Score = 32.3 bits (70), Expect = 7.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 325 FFCTLCLN*LYWHFLETAWCWLIQYLLEF 239
           ++  LCLN L+WHFL+  W ++  ++  F
Sbjct: 164 YYRMLCLN-LFWHFLDIVWVFIFSFVYLF 191


>UniRef50_UPI000150A55F Cluster: hypothetical protein
           TTHERM_00058860; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00058860 - Tetrahymena
           thermophila SB210
          Length = 1115

 Score = 31.9 bits (69), Expect = 9.9
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = +1

Query: 142 KIPEWDSYVPKSNIKFSRKTVKAKSQNLILKTETPINIELTNTK 273
           +IP  DS  PKS+     + +K  +QNL+LK ++ I+   +NT+
Sbjct: 375 EIPIIDSIAPKSSQDKKLQLLKTNNQNLLLKQQSSISSTNSNTQ 418


>UniRef50_Q9LCH4 Cluster: Rgg protein; n=2; Streptococcus|Rep: Rgg
           protein - Streptococcus oralis
          Length = 287

 Score = 31.9 bits (69), Expect = 9.9
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +1

Query: 154 WDSYVPKSNIKFSRKTVKAKSQNLILKTETPINIELTNTKQFPKSAN-KVN 303
           + +Y+   ++ FS+K   A  +N ++K +  ++     T+QFP+  N K+N
Sbjct: 66  YHNYIDSDDVLFSKKVADAYQENNVVKLQNILSSSEALTEQFPEKKNYKLN 116


>UniRef50_P14546 Cluster: Cytochrome c oxidase subunit 3; n=10;
           Trypanosomatidae|Rep: Cytochrome c oxidase subunit 3 -
           Leishmania tarentolae (Sauroleishmania tarentolae)
          Length = 284

 Score = 31.9 bits (69), Expect = 9.9
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = -3

Query: 358 CFYFSGFLSD*FFCTLCLN*LYWHFLETAWCWLIQYLLEFQFSVLSFVIL 209
           CF F     D  F  L +  LYWHF++  W +L++++    F VLS V L
Sbjct: 238 CFNF--LCMDTRFVFLYVVCLYWHFVDCVWFFLLRFV---YFDVLSVVYL 282


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 317,433,122
Number of Sequences: 1657284
Number of extensions: 5200154
Number of successful extensions: 10208
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10198
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35405708495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)