Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j03
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    26   3.2  
SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    26   4.2  
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    25   5.5  

>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 166 VPKSNIKFSRKTVKAKSQNLILKTETPINIELTNTKQFPK 285
           VP+S +  + +TVK +   L + T T IN +L   + F K
Sbjct: 416 VPQSQVPDASETVKERLLKLNMSTTTAINNQLNIFRIFEK 455


>SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 206

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 325 FFCTLCLN*LYWHFLETAWCWL--IQYLLEFQFSVLSF 218
           F+ TL  N + W F +T   WL  +QY + F  +V  F
Sbjct: 145 FWPTLKANYMVWPFFQTVNFWLMPLQYQMPFACTVAIF 182


>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 134 KCSKYRNGIVMCPNQILNSVGKPSRQN 214
           K  +YRNGI   P +I+ S+  P   N
Sbjct: 179 KVFRYRNGIPEGPQEIIPSISFPLESN 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,432,467
Number of Sequences: 5004
Number of extensions: 24380
Number of successful extensions: 43
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)