Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j03
         (546 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20974| Best HMM Match : GED (HMM E-Value=0.42)                      30   1.4  
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)                 30   1.4  
SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)                   29   1.9  
SB_6558| Best HMM Match : PMSR (HMM E-Value=1.3e-22)                   27   7.6  

>SB_20974| Best HMM Match : GED (HMM E-Value=0.42)
          Length = 207

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 160 SYVPKSNIKFSRKTVKAKSQNLILKTE-TPINIELTNTKQFPKSANK 297
           SY P+  +KF     K K    +++T+  PIN++L N  Q   + N+
Sbjct: 26  SYSPQDKLKFIENVWKPKEFKKMMRTDAVPINLQLNNIVQQQIARNR 72


>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
          Length = 360

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/46 (36%), Positives = 28/46 (60%)
 Frame = +1

Query: 169 PKSNIKFSRKTVKAKSQNLILKTETPINIELTNTKQFPKSANKVNL 306
           PK+++K SRKT + KS+N      +P     T++K  PK++ K +L
Sbjct: 130 PKTSLKTSRKTDRKKSRN-----TSPKRSPKTSSKSSPKTSPKTSL 170


>SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)
          Length = 435

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 178 NIKFSRKTVKAKSQNLILKTETPINIELT-NTKQFPKSANK 297
           N K SRKT  + +    LKT+T  N + + NTK  P+  NK
Sbjct: 87  NTKTSRKTKTSSNTKTSLKTKTSRNTKTSRNTKTKPQDKNK 127


>SB_6558| Best HMM Match : PMSR (HMM E-Value=1.3e-22)
          Length = 326

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 149 RNGIVMCPNQILNSV 193
           R G + CPNQI+NS+
Sbjct: 204 RGGTIKCPNQIINSI 218


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,657,125
Number of Sequences: 59808
Number of extensions: 154493
Number of successful extensions: 215
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)