Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j03
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical pr...    31   0.72 
AF016449-4|AAG23998.3|  330|Caenorhabditis elegans Serpentine re...    30   0.95 
AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine re...    29   2.9  
Z81095-3|CAB03159.2|  494|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical
           protein W01D2.4 protein.
          Length = 353

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 293 LALFGNCLVLVNSIFIGV-SVFSIKFCDFALTVFLLNLI 180
           LA+F    ++V+SI  G+  +  I FC++ L +F+L  I
Sbjct: 77  LAIFDILSLIVDSICTGIFDILGISFCNYPLPIFILGAI 115


>AF016449-4|AAG23998.3|  330|Caenorhabditis elegans Serpentine
           receptor, class t protein16 protein.
          Length = 330

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 293 LALFGNCLVLVNSIFIGV-SVFSIKFCDFALTVFLLNLI 180
           L     C   ++S   G+  +F I FCD+ L +F+L  I
Sbjct: 90  LGFCDTCATFIHSFATGIFGLFGIAFCDYPLLIFILGSI 128


>AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine
           receptor, class t protein17 protein.
          Length = 328

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 275 CLVLVNSIFIGV-SVFSIKFCDFALTVFLL 189
           C   V+SI  G+  +  + +CDF L +F+L
Sbjct: 93  CSTFVHSITTGIFGIMGVVYCDFPLVIFIL 122


>Z81095-3|CAB03159.2|  494|Caenorhabditis elegans Hypothetical
           protein F59F4.3 protein.
          Length = 494

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 148 PEWDSYVPKSNIKF-SRKTVKAKSQNLILKTETPINIELTN 267
           P+W SYVP + +KF  R+T    S      T   +  E+ N
Sbjct: 231 PKWKSYVPNTVMKFLPRQTSSTPSVQSKASTNKDVKNEVNN 271


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,723,026
Number of Sequences: 27780
Number of extensions: 133190
Number of successful extensions: 248
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)