Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j03
         (546 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15010.1 68414.m01793 expressed protein                             28   4.7  
At2g19780.1 68415.m02311 leucine-rich repeat family protein / ex...    27   6.2  

>At1g15010.1 68414.m01793 expressed protein
          Length = 142

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 284 FGNCLVLVNSIFIGVSVFSIKFCDFAL 204
           FG CL+L+ S+ +  +VF+ +  D AL
Sbjct: 107 FGTCLLLLVSVPVSSAVFAFRILDLAL 133


>At2g19780.1 68415.m02311 leucine-rich repeat family protein /
           extensin family protein contains leucine rich-repeat
           (LRR) domains Pfam:PF00560, INTERPRO:IPR001611; similar
           to leucine-rich repeat/extensin 1 (GI:13809918)
           [Arabidopsis thaliana]; contains similarity to disease
           resistance protein [Lycopersicon esculentum]
           gi|3894383|gb|AAC78591
          Length = 402

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 293 LALFGNCLVLVNSIFIGVSV 234
           L+LF NCL+L N   IGV V
Sbjct: 16  LSLFLNCLILTNGYSIGVGV 35


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,971,756
Number of Sequences: 28952
Number of extensions: 112420
Number of successful extensions: 236
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)