Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j02
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23940.1 68415.m02858 expressed protein contains 2 transmembr...    56   2e-08
At4g30500.1 68417.m04330 expressed protein contains Pfam PF05620...    45   4e-05
At5g65380.1 68418.m08223 ripening-responsive protein, putative s...    29   2.9  
At4g28350.1 68417.m04058 lectin protein kinase family protein co...    29   2.9  
At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative          29   2.9  
At3g22710.1 68416.m02865 F-box family protein contains F-box dom...    28   6.7  
At5g08710.1 68418.m01035 regulator of chromosome condensation (R...    27   8.9  
At1g49870.1 68414.m05591 expressed protein ; expression supporte...    27   8.9  

>At2g23940.1 68415.m02858 expressed protein contains 2 transmembrane
           domains; contains Pfam profile PF05620: Protein of
           unknown function (DUF788)
          Length = 173

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 33/143 (23%), Positives = 73/143 (51%), Gaps = 1/143 (0%)
 Frame = +2

Query: 263 ENAATVKFYRNMSMAATSFYGIITALFYYENISNWVLFFNVLVLIIHIAC-YQLMMYISK 439
           ENA  +   R + +A+ + Y ++  L +Y + + W  +  +++  +  A  Y+ +  ++K
Sbjct: 12  ENAKHMAKLRRIIIASNAVYFVVRMLIFYSSFT-WKHWIGLVITSLAYAFPYKQLDQMAK 70

Query: 440 PRYLNNTQLLDPGLDLNMEGGMGEHIKDIVILSSITQVLALINNYFWLLLLILPIRVFWL 619
           P   ++ +L+D G D+   GG+  ++ D++ ++   Q+ ++I   FW   L++P   F +
Sbjct: 71  PSVTDDGELIDGGFDMTT-GGICGYLHDVIYITCFVQLASIITGKFWYTYLVIP--AFGV 127

Query: 620 LWTNILGPWFFQEAPENPEKDEK 688
              + L   F  +  E   +DEK
Sbjct: 128 YKASGLIRGFMSQGSEGGVEDEK 150


>At4g30500.1 68417.m04330 expressed protein contains Pfam PF05620:
           Protein of unknown function (DUF788)
          Length = 173

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 28/115 (24%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
 Frame = +2

Query: 263 ENAATVKFYRNMSMAATSFYGIITALFYYENIS--NWVLFFNVLVLIIHIACYQLMMYIS 436
           ENA  +   R + +     Y ++  +  + + +  NW+    VL  + +   Y+L+  ++
Sbjct: 12  ENARHMAKLRLIMILCNILYVLVRVIISHSSHTWKNWIGL--VLTSLGYGIPYKLLHQMA 69

Query: 437 KPRYLNNTQLLDPGLDLNMEGGMGEHIKDIVILSSITQVLALINNYFWLLLLILP 601
           KP   +  +LLD G D++  G  G ++ D++ ++   QV ++I+  FW   L++P
Sbjct: 70  KPSVSDAGELLDGGFDMSTPGMCG-YLHDVLYITCFVQVGSIISGKFWYAYLVIP 123


>At5g65380.1 68418.m08223 ripening-responsive protein, putative
           similar to ripening regulated protein DDTFR18
           [Lycopersicon esculentum] GI:12231296; contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 486

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = +2

Query: 482 DLNMEGGMGEHIKDIVILSSITQVLALINNYFWLLLLILPIRVFWLLWTNI 634
           +L    G G     IV   S+TQ L +I  +FW+L+++L  ++ W+  +++
Sbjct: 327 ELGAGNGKGARFATIV---SVTQSL-IIGLFFWVLIMLLHNQIAWIFSSSV 373


>At4g28350.1 68417.m04058 lectin protein kinase family protein
           contains Pfam domains, PF00138: Legume lectins alpha
           domain, PF00139: Legume lectins beta domain and PF00069:
           Protein kinase domain
          Length = 649

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +1

Query: 538 IYNSSFSIDKQLLLAIASNFTNKSILAIVDQYTWSL 645
           IYNS+F+    LLL  A+  +  SIL + +Q T+S+
Sbjct: 27  IYNSNFTTTNTLLLGNATVKSPPSILTLTNQTTFSI 62


>At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative 
          Length = 953

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +1

Query: 490 HGGWN-----GRTYQGYCNTLIYNSSFSIDKQLLLAIASNFTNKSILAIVD 627
           HGGW       RT   +C  L+ N   S  ++ +L   S+FT+K+  + V+
Sbjct: 154 HGGWFDPDNLSRTLSSFCPELLQNDDSSDPREDILDDGSSFTSKTATSEVE 204


>At3g22710.1 68416.m02865 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 326

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 512 HIKDIVILSSITQVLALINNYFWLLLLILPIRVFWLL 622
           ++ D     +I  ++   N Y+  +L +LPI + W+L
Sbjct: 260 NVNDDATSKNIVYIIGEDNGYYTEILFLLPINIHWVL 296


>At5g08710.1 68418.m01035 regulator of chromosome condensation
           (RCC1) family protein / UVB-resistance protein-related
           contains Pfam PF00415 : Regulator of chromosome
           condensation (RCC1); similar to UVB-resistance protein
           UVR8  (GI:10177674) {Arabidopsis thaliana}
          Length = 434

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 657 SWKNQGPSILVHNSQNTLIGKIRSNSQ 577
           SW   G   L H  Q++L G +RSNS+
Sbjct: 211 SWGGGGSGRLGHGHQSSLFGILRSNSE 237


>At1g49870.1 68414.m05591 expressed protein ; expression supported
           by MPSS
          Length = 828

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +1

Query: 475 RFRFEHGGWNGRTYQGYCNTLIYNSSFSIDKQLLLAIASNF 597
           ++R E  G +GR    +  T  + ++F +DK++  A+ + F
Sbjct: 185 QYRIETSGTHGRGSPTHTVTASFETAFDVDKEVAAAVKTAF 225


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,814,974
Number of Sequences: 28952
Number of extensions: 305403
Number of successful extensions: 589
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)