Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10i24
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo...    69   5e-13
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    26   4.8  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    25   6.3  

>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 185

 Score = 68.9 bits (161), Expect = 5e-13
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
 Frame = +3

Query: 249 YGASRE-RNDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILR 425
           Y A R  R     + F++  DLS L++WN K + +YL A Y T  +E NQVV+WDKI+  
Sbjct: 58  YHAFRNVRQQYAQVKFNMDADLSELWDWNTKHVVVYLVASYSTEKHEKNQVVVWDKILSS 117

Query: 426 GENAVLDFKNMNTK---YYFWDDGNGLKGHSNVTLTLSWNIIPNAGLL 560
            E + +  K+  +    + F +  N  +G  N T TL W + P  G L
Sbjct: 118 PEESKMFMKDTLSNIQAHPFNEYSNQFEG-KNATYTLHWTVSPKMGFL 164


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 253 EHLGNEMILAS*LSILKQICPTSLTGTLNSCSYISLPNTLHQ 378
           E LGN+ I A+   ++K++C  S   T N C  +S  + + Q
Sbjct: 171 EKLGNKSIEANRSPLIKELC-ESANSTENVCFSVSTVDEIQQ 211


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 444 DFKNMNTKYYFWDDGNGLKGHSNVTLTLSWNIIPNAGLLPNIQAL 578
           D +  +TK++     +GL    +  L LSW  + N   L  I+ L
Sbjct: 462 DSEEKSTKWFLQQIDHGLFPFQSTVLILSWLCVENTVTLKKIKML 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,295,954
Number of Sequences: 5004
Number of extensions: 44186
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)