BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov10i24 (593 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 09_06_0238 - 21791139-21791264,21791862-21791948,21792713-217927... 93 2e-19 01_01_0202 + 1753394-1753667,1753934-1753977,1754105-1754152,175... 91 8e-19 01_01_1185 + 9437432-9437678,9437800-9437902,9438121-9438151,943... 28 6.5 >09_06_0238 - 21791139-21791264,21791862-21791948,21792713-21792766, 21793199-21793261,21793363-21793410,21793626-21793688 Length = 146 Score = 93.1 bits (221), Expect = 2e-19 Identities = 48/113 (42%), Positives = 65/113 (57%) Frame = +3 Query: 216 TVKVVVKNVPDYGASRERNDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNELNQ 395 T V + N+ + ND +T ++ DLS+LF WN KQ+F+++ AEY TP N LNQ Sbjct: 17 TASVKILNINWFQKEANGNDEVSMTLNISADLSSLFTWNTKQVFVFVAAEYETPQNALNQ 76 Query: 396 VVLWDKIILRGENAVLDFKNMNTKYYFWDDGNGLKGHSNVTLTLSWNIIPNAG 554 V LWD II E+A N KY F D G+ LKG + LT+ W+I+P G Sbjct: 77 VSLWDGIIPSKEHAKFLIHTTN-KYRFIDQGSNLKG-KDFNLTMHWHIMPKTG 127 >01_01_0202 + 1753394-1753667,1753934-1753977,1754105-1754152, 1754940-1755002,1755460-1755513,1756073-1756159, 1756253-1756381 Length = 232 Score = 90.6 bits (215), Expect = 8e-19 Identities = 46/123 (37%), Positives = 71/123 (57%) Frame = +3 Query: 192 YRTGAQMNTVKVVVKNVPDYGASRERNDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYI 371 ++ G Q+ + +V + + ND LTF+L +L +LF W+ KQ+F++LTAEY Sbjct: 94 WKVGCQILILSTMVTKINRFHKQLNGNDKVTLTFNLSANLESLFTWSTKQVFVFLTAEYE 153 Query: 372 TPSNELNQVVLWDKIILRGENAVLDFKNMNTKYYFWDDGNGLKGHSNVTLTLSWNIIPNA 551 N LNQV LWD II + A L + + +KY D G+ L+G V L L W+++P A Sbjct: 154 NSKNSLNQVSLWDHIIPDKDKANLQVE-VKSKYPLIDQGSSLRG-KKVQLVLHWHVMPKA 211 Query: 552 GLL 560 G++ Sbjct: 212 GVM 214 >01_01_1185 + 9437432-9437678,9437800-9437902,9438121-9438151, 9438268-9438363 Length = 158 Score = 27.9 bits (59), Expect = 6.5 Identities = 17/68 (25%), Positives = 29/68 (42%) Frame = +3 Query: 237 NVPDYGASRERNDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKI 416 NVP A ++ F +F LK + WNV + +L + + ++ LW+ Sbjct: 4 NVPVMSACDREREVSFASFGLKEQRQRMCLWNVPMMECFLWVQ-----EQRQRMCLWNVP 58 Query: 417 ILRGENAV 440 I+ E V Sbjct: 59 IIEREVGV 66 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,904,920 Number of Sequences: 37544 Number of extensions: 252595 Number of successful extensions: 480 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 472 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 479 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1411925004 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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