Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10i24
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   6.9  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   6.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   6.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   9.1  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 189 PQSGLIKNTRK*DMLVRLA 133
           PQSG + NT++ + L+ L+
Sbjct: 362 PQSGRVNNTQRNEYLLALS 380


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 486 GNGLKGHSNVTLTLSWNIIPNAGLLPNIQALGQ 584
           GN +K ++   L +  NI+   G   N+Q  GQ
Sbjct: 347 GNHVKLYTKQGLNVLGNIVQGNGDSVNVQLYGQ 379


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 486 GNGLKGHSNVTLTLSWNIIPNAGLLPNIQALGQ 584
           GN +K ++   L +  NI+   G   N+Q  GQ
Sbjct: 347 GNHVKLYTKQGLNVLGNIVQGNGDSVNVQLYGQ 379


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 138 LACMSVLHFLSLTRNTC 88
           LACM  LH+  L    C
Sbjct: 159 LACMMDLHYYPLDSQNC 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,361
Number of Sequences: 438
Number of extensions: 3244
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)